Table 2.
Twenty Most Strongly Associated SNPs from the Seoul Project for Log10(Total Adiponectin) Based on Linear Regression Model
Cohort 1 (n = 979) |
Cohort 2 (n = 3,022) |
Combined Set (n = 4,001) |
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Chromosome | SNP | Position | Nearest Gene | MAF | Effect (μg/ml) | p Value | MAF | Effect (μg/ml) | p Value | Effect (μg/ml) | p Value |
16 | rs3865188 | 81208218 | CDH13 | 0.309 | −0.095 | 1.685 × 10−15 | 0.296 | −0.096 | 6.582 × 10−39 | −0.096 | 7.793 × 10−51 |
16 | rs12596316 | 81203653 | CDH13 | 0.311 | −0.088 | 4.763 × 10−13 | 0.298 | −0.096 | 1.731 × 10−37 | −0.094 | 8.287 × 10−47 |
16 | rs7193788 | 81213661 | CDH13 | 0.470 | −0.057 | 3.643 × 10−07 | 0.449 | −0.071 | 6.304 × 10−24 | −0.068 | 2.484 × 10−28 |
16 | rs3865186 | 81204473 | CDH13 | 0.448 | 0.057 | 5.844 × 10−07 | 0.458 | 0.063 | 9.984 × 10−19 | 0.062 | 1.634 × 10−23 |
16 | rs3852724 | 81203595 | CDH13 | 0.448 | 0.057 | 6.225 × 10−07 | 0.458 | 0.063 | 6.727 × 10−19 | 0.062 | 1.046 × 10−23 |
16 | rs3865185 | 81203963 | CDH13 | 0.448 | 0.057 | 6.225 × 10−07 | 0.458 | 0.064 | 4.621 × 10−19 | 0.062 | 7.568 × 10−24 |
3 | rs1438545 | 106535094 | ALCAM | 0.105 | 0.089 | 6.286 × 10−07 | 0.086 | −0.014 | 0.2577 | 0.029 | 0.006585 |
1 | rs12072620 | 188794697 | FAM5C | 0.177 | −0.074 | 0.0000009 | 0.166 | 0.008 | 0.4387 | −0.011 | 0.1741 |
1 | rs1501501 | 188795068 | FAM5C | 0.177 | −0.074 | 0.0000009 | 0.166 | 0.007 | 0.4664 | −0.012 | 0.1629 |
13 | rs4943398 | 36083064 | LOC400120 | 0.217 | −0.064 | 0.0000029 | 0.227 | −0.020 | 0.02218 | −0.032 | 0.00002418 |
11 | rs4936310 | 110405970 | C11orf53 | 0.229 | 0.066 | 0.0000043 | 0.182 | 0.018 | 0.04669 | 0.035 | 0.00001446 |
8 | rs436753 | 88599977 | CNBD1 | 0.318 | 0.063 | 0.0000063 | 0.268 | −0.014 | 0.08527 | 0.006 | 0.3774 |
14 | rs7148411 | 19629122 | OR4K17 | 0.230 | 0.063 | 0.0000099 | 0.245 | −0.008 | 0.3319 | 0.008 | 0.2529 |
12 | rs17251474 | 91089449 | BTG1 | 0.198 | −0.064 | 0.0000114 | 0.195 | 0.008 | 0.3818 | −0.010 | 0.1821 |
5 | rs17156226 | 103533627 | NUDT12 | 0.204 | 0.068 | 0.0000119 | 0.164 | 0.003 | 0.7811 | 0.026 | 0.002127 |
15 | rs7171526 | 60497216 | FLJ38723 | 0.118 | −0.078 | 0.0000119 | 0.114 | 0.008 | 0.4576 | −0.010 | 0.3096 |
8 | rs10957333 | 66104003 | CYP7B1 | 0.106 | −0.080 | 0.0000163 | 0.106 | −0.001 | 0.9349 | −0.019 | 0.05887 |
1 | rs2889921 | 220406261 | KIAA1822L | 0.167 | −0.087 | 0.0000194 | 0.183 | −0.018 | 0.05355 | −0.036 | 0.00002391 |
4 | rs11722604 | 157084201 | CTSO | 0.192 | 0.077 | 0.0000231 | 0.071 | 0.004 | 0.7631 | 0.052 | 0.000006402 |
10 | rs2817677 | 98811818 | SLIT1 | 0.229 | −0.058 | 0.0000234 | 0.214 | 0.000 | 0.9617 | −0.012 | 0.1117 |
Table lists the minor allele frequency (MAF), estimated effect size (β) for the 20 most significant SNPs identified from the Seoul cohort (cohort 1; n = 979), and their p values in a multiple linear regression model considering age, sex, smoking status, and body mass index under an additive model. MAF, estimated effect size (β), and p value for the Ansan cohort (cohort 2) are also shown.