Table 2. Comparison of conformations of different EphA4 structures.
| Structure | Conformation | rmsd | rmsd, loops omitted | Displacement D-E residue #/A (Cα) | Displacement J-K residue #/A (Cα) |
|---|---|---|---|---|---|
| Our chain A | closed | 2.523 | 1.089 | 63/8.13 | 161/10.14 |
| Our chain B | open | 3.478 | 1.268 | 61/7.64 | 159/15.39 |
| 2WO1 chain A | closed | 1.241 | 1.023 | 61/4.29 | 161/3.05 |
| 2WO1 chain B | closed | reference | reference | reference | reference |
| 3CKH chain A | open? | 3.025 | 0.969 | 64/7.98 | 156/14.12 |
| 3CKH chain B | closed? | 1.119 | 0.907 | 65/3.12 | 161/4.19 |
| 2WO2 (ephrin B2) | closed | 3.282 | 1.465 | 63/10.49 | 155/14.98 |
| 3GXU (ephrin B2) | open | 3.290 | 0.798 | 63/8.86 | 155/14.70 |
| 2WO3 (ephrin A2) | open | 3.080 | 1.019 | 63/8.13 | 155/13.01 |
(Question marks indicate that the model is incomplete in the region under consideration)