Table 3.

Features of clusters predicted by different algorithms on the both the original and C_L networks.

		CMC					MCL
			Avg			Avg		Avg			Avg
PPI	Setting	Cluster	Size	Prec	Recall	Den.	Cluster	Size	Prec	Recall	Den.
BioGRID	(1)	295	9.58	0.210	0.124	0.78	376	10.41	0.098	0.072	0.40
	(2)	296	9.36	0.361	0.155	0.75	647	9.43	0.2411	0.173	0.49
Gavin6	(1)	155	10.51	0.367	0.203	0.66	160	11.72	0.471	0.194	0.50
	(2)	299	9.55	0.401	0.239	0.62	327	9.40	0.486	0.261	0.57
Gavin2	(1)	110	11.5	0.390	0.118	0.44	115	9.81	0.652	0.252	0.39
	(2)	213	9.69	0.417	0.159	0.49	373	9.63	0.479	0.266	0.40
Krogan	(1)	215	8.93	0.251	0.124	0.60	246	8.07	0.146	0.094	0.43
	(2)	166	8.15	0.494	0.163	0.64	247	7.77	0.477	0.184	0.54
Ho	(1)	121	8.17	0.206	0.057	0.32	146	8.19	0.486	0.145	0.34
	(2)	149	7.89	0.335	0.103	0.45	96	7.28	0.500	0.110	0.36
		PCP					RNSC
			Avg			Avg		Avg			Avg
PPI	Setting	Cluster	Size	Prec	Recall	Den.	Cluster	Size	Prec	Recall	Den.
BioGRID	(1)	174	8.73	0.253	0.109	0.51	174	6.31	0.367	0.119	0.78
	(2)	341	9.27	0.343	0.158	0.60	301	7.36	0.425	0.156	0.81
Gavin6	(1)	95	9.61	0.463	0.185	0.63	105	6.41	0.381	0.126	0.74
	(2)	228	9.14	0.482	0.243	0.62	295	7.33	0.410	0.234	0.72
Gavin2	(1)	54	9.40	0.537	0.125	0.50	89	5.98	0.370	0.074	0.61
	(2)	121	9.17	0.446	0.141	0.45	158	6.81	0.487	0.132	0.59
Krogan	(1)	100	7.90	0.380	0.109	0.61	92	6.25	0.423	0.081	0.72
	(2)	205	7.66	0.458	0.158	0.68	200	6.77	0.510	0.165	0.69
Ho	(1)	42	5.59	0.285	0.040	0.29	15	6.85	0.333	0.046	0.41
	(2)	51	5.00	0.372	0.060	0.37	26	6.84	0.370	0.073	0.38

In the setting column, (1) refers to the original network and (2) refers the network obtained by seggregation according to informative cellular component GO term annotations.