Table 7.
Summary of QC statistics for most significant windows
| Chromosome | SNP | Min differential missingness p-value |
Haplotype HWE p-value |
Min SNP HWE p-value |
|---|---|---|---|---|
| 2 | rs6759206 | 8.20E-02 | 4.20E-01 | 2.29E-01 |
| 2 | rs2317011 | 9.86E-02 | 3.90E-01 | 2.29E-01 |
| 2 | rs1962550 | 9.86E-02 | 3.90E-01 | 2.29E-01 |
| 5 | rs2964798 | 4.99E-02 | 4.90E-01 | 1.57E-02 |
| 5 | rs13155209 | 4.99E-02 | 7.60E-01 | 1.57E-02 |
| 5 | rs10043680 | 4.86E-02 | 8.20E-01 | 2.47E-01 |
| 5 | rs17771257 | 4.86E-02 | 5.80E-01 | 3.75E-01 |
| 5 | rs17176973 | 4.86E-02 | 8.80E-01 | 7.01E-02 |
| 5 | rs17075700 | 7.73E-02 | 3.90E-01 | 4.29E-02 |
| 7 | rs10227362 | 1.16E-01 | 6.70E-01 | 3.85E-01 |
| 7 | rs12534223 | 1.16E-01 | 9.30E-01 | 1.33E-01 |
| 9 | rs10967991 | 1.82E-01 | < 0.001 | 1.07E-01 |
| 9 | rs1982915 | 1.82E-01 | < 0.001 | 1.07E-01 |
| 9 | rs2783010 | 1.82E-01 | 1.10E-02 | 1.07E-01 |
| 9 | rs10967992 | 7.94E-02 | 1.60E-02 | 1.07E-01 |
| 9 | rs10967993 | 7.94E-02 | 1.60E-01 | 1.07E-01 |
| 9 | rs872251 | 6.24E-03 | 3.20E-01 | 7.78E-03 |
| 9 | rs7850685 | 6.24E-03 | 5.00E-02 | 7.78E-03 |
| 9 | rs13049 | 6.24E-03 | 5.70E-01 | 1.03E-01 |
| 10 | rs682664 | 5.85E-02 | 4.70E-01 | 3.94E-02 |
| 12 | rs10774841 | 3.08E-01 | 3.10E-01 | 2.40E-02 |
| 15 | rs3784405 | 1.99E-01 | 6.30E-01 | 3.83E-01 |
| 17 | rs9904870 | 1.88E-01 | 4.80E-01 | 2.50E-01 |
| 18 | rs4542737 | 4.05E-02 | 7.60E-01 | 6.47E-04 |
| 20 | rs967417 | 2.42E-01 | 4.30E-01 | 1.23E-01 |
QC statistics for 25 most significant main-effects windows.