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. 2010 Oct 5;4(10):e834. doi: 10.1371/journal.pntd.0000834

Table 2. Characteristics of the 14 candidate biomarkers.

Compound Classification p-value RT (min) XCMS average m/z Fold change Molecular formula MS/MS major fragments (% abundance)a FTMS accurate mass
Fatty acid/Sterol lipid 6.32×10−13 45.7 521.4197 −3.36 C32H56O5 111.0451(39.15)503.4123(29.7) 521.4190
Fatty acid/Sterol lipid 2.06×10−11 45.7 469.3872 −3.71 C28H52O5 415.357(100)291.2331(48.57) 469.3888
Sterol lipid 2.16×10−11 41.4 425.3611 −3.55 C26H48O4 389.3432(100.0)139.1107(12.8) 425.3625
Protein 3.59×10−10 31.6 979.9368 −3.99 -
Protein 6.53×10−10 31.5 986.2677 −5.65 -
Hexacosenoic acid 4.01×10−10 50.7 395.3867 −2.77 C26H50O2 71.0859(100.0)57.0709(81.99) 395.3804
Pentacosenoic acid 7.75×10−10 49.1 381.3710 −2.43 C25H48O2 71.0858(100.0)57.0719(58.75) 381.3728
Fatty alcohol/aldehyde 2.39×10−8 48.5 241.2505 1.54 C16H32O 55.0551(77.61)83.0877(46.81) b
Fatty acid 1.40×10−9 39.0 367.2840 −2.28 C22H38O4 331.2649(100.0)79.0547(33.89) 367.2828
Hydroxy-octadecenoic acid 1.52×10−9 46.1 299.2581 −2.54 C18H34O3 95.0851(100)71.0863(82.07) 299.2592
Phosphorylated sphingolipid 4.83×10−9 30.0 352.2256 −1.55 C16H34NO5P 236.2366(100.0)184.0694(25.99) 352.2247
Sterol lipid 1.44×10−8 45.5 447.3470 −2.19 C28H46O4 429.3376(43.06)411.3276(32.91) 447.3470
Protein 2.05×10−8 33.3 966.5938 −3.09 -
Protein 5.24×10−8 31.7 1086.2922 −2.76 -
a

Fragments collected under a collision-induced dissociation energy of 20 eV.

b

FTMS accurate mass was not obtained for this compound. This formula is based on TOF-MS mass accuracy.

Statistical values such as p-value and fold change were determined by XCMS analysis of the O. volvulus + and O. volvulus − mass spectral data files. Retention time (RT), and mass to charge value (m/z), fold change and the direction of overall ion intensity change, represents the average value across all files. Molecular formula and compound class identifier as determined by MS/MS and FTMS analysis is provided.

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