Table 3. Summary of the diagnostic accuracy of the machine learning algorithm analysis.
Algorithm | Classifier type | Entire sample set | Africa samples | ||||
Sensitivity | Specificity | ROC area | Sensitivity | Specificity | ROC area | ||
BayesNet | Bayesian network | 84.8 | 87 | 0.929 | 97.3 | 99.1 | 1 |
NaiveBayes | Bayesian network | 88.6 | 88.3 | 0.930 | 94.5 | 98.2 | 1 |
Logistic | Logistic regression | 85.6 | 85.2 | 0.898 | 98.6 | 99.6 | 0.999 |
IB1 | Nearest neighbor | 87.1 | 83.9 | 0.855 | 98.6 | 95.8 | 0.972 |
OneR | Minimum error attribute | 76.5 | 76.6 | 0.766 | 89.0 | 85.2 | 0.871 |
Multilayer perceptron | Backpropagation classification | 87.9 | 85.9 | 0.921 | 98.6 | 95.8 | 1 |
FLR | Fuzzy lattice reasoning | 81.1 | 83.7 | 0.824 | 98.6 | 99.6 | 0.991 |
Functional trees | Classification tree | 84.1 | 83.6 | 0.861 | 100 | 100 | 1 |
Random forest | Classification tree | 88.6 | 89.3 | 0.954 | 97.3 | 95.4 | 0.997 |
The mass spectral ion intensities of the top 14 candidate onchocerciasis biomarkers from onchocerciasis infected and uninfected samples were compared between the multi-region sample set and the African blood samples. All results were obtained using a 10 fold cross validation analysis.