TABLE 1.
Summary of MLST data, supplier, and number of Swiss broiler isolates analyzed
| Origin | Bacterial species | CCa | STb | No. of isolates from slaughterhouse: |
Total | ||||
|---|---|---|---|---|---|---|---|---|---|
| A | B | C | D | E | |||||
| Cecum | C. jejuni | 21 | 19 | 0 | 0 | 0 | 0 | 1 | 1 |
| 21 | 0 | 4 | 1 | 1 | 1 | 7 | |||
| 50 | 0 | 1 | 4 | 0 | 1 | 6 | |||
| 262 | 0 | 1 | 0 | 0 | 0 | 1 | |||
| 883 | 0 | 1 | 0 | 0 | 0 | 1 | |||
| 917 | 0 | 1 | 0 | 0 | 0 | 1 | |||
| 22 | 22 | 1 | 0 | 2 | 0 | 0 | 3 | ||
| 45 | 45 | 2 | 7 | 2 | 0 | 1 | 12 | ||
| 137 | 0 | 2 | 1 | 0 | 0 | 3 | |||
| 1964 | 0 | 0 | 1 | 0 | 0 | 1 | |||
| 48 | 48 | 1 | 5 | 2 | 1 | 1 | 10 | ||
| 61 | 61 | 0 | 1 | 0 | 0 | 0 | 1 | ||
| 206 | 122 | 0 | 2 | 1 | 0 | 0 | 3 | ||
| 257 | 257 | 0 | 1 | 4 | 1 | 1 | 7 | ||
| 283 | 267 | 0 | 1 | 0 | 0 | 0 | 1 | ||
| 383 | 0 | 1 | 0 | 0 | 0 | 1 | |||
| 354 | 354 | 0 | 1 | 0 | 0 | 0 | 1 | ||
| 1073 | 0 | 0 | 0 | 0 | 1 | 1 | |||
| 443 | 51 | 0 | 1 | 0 | 0 | 0 | 1 | ||
| 460 | 2952 | 0 | 2 | 0 | 0 | 0 | 2 | ||
| 607 | 3963 | 0 | 0 | 0 | 2 | 0 | 2 | ||
| ND | 464 | 0 | 2 | 0 | 0 | 3 | 5 | ||
| ND | 586 | 0 | 2 | 1 | 0 | 1 | 4 | ||
| ND | 2655 | 0 | 1 | 0 | 0 | 0 | 1 | ||
| Total | 4 | 37 | 19 | 5 | 11 | 76 | |||
| C. coli | 828 | 825 | 0 | 2 | 1 | 2 | 0 | 5 | |
| 827 | 1 | 4 | 6 | 0 | 0 | 11 | |||
| 829 | 0 | 0 | 0 | 0 | 1 | 1 | |||
| 854 | 0 | 1 | 3 | 0 | 1 | 5 | |||
| 1096 | 0 | 2 | 1 | 0 | 0 | 3 | |||
| 1545 | 0 | 1 | 0 | 0 | 0 | 1 | |||
| 1556 | 0 | 0 | 0 | 1 | 0 | 1 | |||
| 1563 | 0 | 1 | 0 | 0 | 0 | 1 | |||
| 1614 | 0 | 0 | 0 | 0 | 1 | 1 | |||
| 2142 | 0 | 2 | 2 | 0 | 1 | 5 | |||
| 3336 | 0 | 0 | 1 | 0 | 0 | 1 | |||
| ND | 1049 | 0 | 0 | 0 | 0 | 1 | 1 | ||
| ND | 1680 | 0 | 0 | 1 | 0 | 0 | 1 | ||
| ND | 3989 | 0 | 1 | 0 | 0 | 0 | 1 | ||
| Total | 1 | 14 | 15 | 3 | 5 | 38 | |||
| Neck skin | C. jejuni | 21 | 19 | 0 | 1 | 0 | 0 | 0 | 1 |
| 21 | 0 | 5 | 3 | 2 | 0 | 10 | |||
| 50 | 0 | 4 | 7 | 0 | 1 | 12 | |||
| 262 | 0 | 1 | 1 | 0 | 0 | 2 | |||
| 883 | 0 | 0 | 1 | 0 | 0 | 1 | |||
| 917 | 0 | 0 | 1 | 0 | 0 | 1 | |||
| 3988 | 0 | 0 | 1 | 0 | 0 | 1 | |||
| 22 | 22 | 1 | 3 | 6 | 0 | 0 | 10 | ||
| 42 | 42 | 0 | 2 | 0 | 0 | 0 | 2 | ||
| 45 | 11 | 0 | 1 | 0 | 0 | 0 | 1 | ||
| 45 | 1 | 8 | 11 | 0 | 2 | 22 | |||
| 137 | 0 | 2 | 0 | 0 | 0 | 2 | |||
| 418 | 0 | 1 | 0 | 0 | 0 | 1 | |||
| 782 | 0 | 0 | 1 | 0 | 0 | 1 | |||
| 1964 | 0 | 0 | 1 | 0 | 0 | 1 | |||
| 2197 | 0 | 0 | 1 | 0 | 0 | 1 | |||
| 2219 | 0 | 0 | 1 | 0 | 0 | 1 | |||
| 48 | 48 | 0 | 4 | 3 | 0 | 0 | 7 | ||
| 52 | 52 | 0 | 0 | 1 | 0 | 1 | 2 | ||
| 61 | 61 | 0 | 2 | 1 | 0 | 0 | 3 | ||
| 177 | 1388 | 0 | 1 | 0 | 0 | 0 | 1 | ||
| 206 | 122 | 0 | 3 | 0 | 0 | 0 | 3 | ||
| 227 | 0 | 0 | 1 | 0 | 0 | 1 | |||
| 572 | 0 | 1 | 0 | 0 | 0 | 1 | |||
| 257 | 257 | 0 | 1 | 15 | 0 | 4 | 20 | ||
| 824 | 0 | 0 | 0 | 0 | 1 | 1 | |||
| 283 | 267 | 0 | 2 | 1 | 0 | 2 | 5 | ||
| 383 | 0 | 1 | 0 | 0 | 0 | 1 | |||
| 353 | 353 | 0 | 2 | 0 | 0 | 0 | 2 | ||
| 354 | 878 | 1 | 3 | 4 | 0 | 0 | 8 | ||
| 1073 | 0 | 2 | 1 | 0 | 2 | 5 | |||
| 362 | 587 | 0 | 0 | 1 | 0 | 0 | 1 | ||
| 443 | 51 | 0 | 1 | 1 | 0 | 0 | 2 | ||
| 460 | 2952 | 0 | 1 | 0 | 0 | 0 | 1 | ||
| 607 | 607 | 0 | 1 | 1 | 0 | 0 | 2 | ||
| 3963 | 0 | 1 | 2 | 7 | 0 | 10 | |||
| 677 | 677 | 0 | 0 | 1 | 0 | 0 | 1 | ||
| 1034 | 1956 | 1 | 0 | 0 | 0 | 0 | 1 | ||
| ND | 441 | 0 | 0 | 1 | 1 | 0 | 2 | ||
| ND | 464 | 0 | 3 | 0 | 0 | 2 | 5 | ||
| ND | 586 | 0 | 5 | 3 | 0 | 2 | 10 | ||
| ND | 1962 | 0 | 0 | 1 | 0 | 0 | 1 | ||
| ND | 3964 | 0 | 0 | 0 | 0 | 1 | 1 | ||
| 362 | 587 | 0 | 0 | 1 | 0 | 0 | 1 | ||
| Total | 4 | 62 | 73 | 10 | 18 | 167 | |||
| C. coli | 828 | 825 | 0 | 1 | 2 | 4 | 0 | 7 | |
| 827 | 3 | 10 | 7 | 0 | 1 | 21 | |||
| 829 | 0 | 3 | 0 | 0 | 1 | 4 | |||
| 854 | 0 | 1 | 2 | 1 | 0 | 4 | |||
| 1016 | 0 | 2 | 0 | 0 | 0 | 2 | |||
| 1096 | 0 | 2 | 0 | 0 | 1 | 3 | |||
| 1413 | 0 | 0 | 1 | 0 | 0 | 1 | |||
| 1614 | 0 | 0 | 1 | 0 | 1 | 2 | |||
| 2142 | 0 | 5 | 4 | 0 | 0 | 9 | |||
| 3023 | 0 | 0 | 0 | 1 | 0 | 1 | |||
| 3990 | 0 | 0 | 1 | 0 | 0 | 1 | |||
| 3991 | 0 | 1 | 0 | 0 | 0 | 1 | |||
| ND | 1584 | 0 | 0 | 0 | 2 | 0 | 2 | ||
| ND | 3989 | 0 | 1 | 0 | 0 | 0 | 1 | ||
| Total | 3 | 26 | 18 | 8 | 4 | 59 | |||
a
ND, not defined.
b
New STs are indicated by boldface.