TABLE 1.
AmrZ protein |
algD |
amrZ1 |
amrZ2 |
|||
---|---|---|---|---|---|---|
Avg Kd (nM) ± SDa | Fold over WTb | Avg Kd (nM) ± SDa | Fold over WTb | Avg Kd (nM) ± SDa | Fold over WTb | |
WT | 107 ± 17 | 1.0 | 4.34 ± 0.74 | 1.0 | 59 ± 9.7 | 1.0 |
D2 | 143 ± 17 | 1.33 | 3.87 ± 0.76 | 0.89 | 89 ± 15 | 1.52 |
Δ5 | 140 ± 21 | 1.30 | 9.77 ± 1.92 | 2.25 | 134 ± 13 | 2.28 |
Δ11 | 170 ± 25 | 1.58 | 17.9 ± 5.70 | 4.12 | 106 ± 25 | 1.81 |
R14A | 613 ± 86 | 5.72 | 3.96 ± 0.73 | 0.91 | 306 ± 28 | 5.21 |
K18A | 2,300 ± 472 | 21.46 | 1,190 ± 210 | 274.2 | 306 ± 78 | 5.22 |
V20A | 474 ± 97 | 4.42 | 45.4 ± 10.6 | 10.46 | 988 ± 98 | 16.83 |
R22A | 1,347 ± 133 | 12.57 | 192 ± 26 | 44.24 | 875 ± 89 | 14.91 |
The Kd was calculated based on the averages of data from three independent experiments. The data were graphed with SigmaPlot (a representative experiment is graphed in Fig. 3 and 4C and D) and analyzed based on a single-ligand-binding model with saturation.
Fold over the wild type (WT) is defined as (calculated Kd of sample)/(calculated Kd of the wild type) for each binding site.