. Author manuscript; available in PMC: 2010 Nov 1.

Published in final edited form as: Wiley Interdiscip Rev Syst Biol Med. 2010 Nov–Dec;2(6):708–733. doi: 10.1002/wsbm.93

TABLE 1.

microRNA-Related Tools and Databases

Category	Program Name	URL	References
Stand-alone prediction programs	DIANA-microT	http://www.diana.pcbi.upenn.edu/	60
	Micro-Inspector	http://mirna.imbb.forth.gr/microinspector/	69
	miRanda	http://www.microrna.org/	59
	mi-Target	http://cbit.snu.ac.kr/~miTarget	70
	Mir-Target2	http://mirdb.org/miRDB/	61
	NBmirTar	http://wotan.wistar.upenn.edu/NBmiRTar/	62
	MovingTargets	Program is made available on request	58
	PicTar	http://pictar.bio.nyu.edu	58
	PITA	http://genie.weizmann.ac.il/pubs/mir07	63
	RNA22	http://cbcsrv.watson.ibm.com/rna22.html	71
	RNA Hybrid	http://bibiserv.techfak.uni-bielefeld.de/	72
	TargetScan	http://www.targetscan.org/	53
	TargetBoost	http://demo1.interagon.com/demo	73
Integrated prediction programs	miRGen	http://www.diana.pcbi.upenn.edu/miRGen.html	74
	miRGator	http://genome.ewha.ac.kr/miRGator/miRGator.html	75
	MiRNAMap2.0	http://mirnamap.mbc.nctu.edu.tw/	76
	miRecords	http://miRecords.umn.edu/miRecords	65
	MAMI	http://mami.med.harvard.edu/	77
	miRgate	http://www.cepheid.com/tests-and-reagents/cepheid-microrna/	78
	MMIA	http://129.79.233.81/~MMIA/	79