| Phosphorylation databases |
Phospho.ELM8.2 |
http://phospho.elm.eu.org/ |
137,138
|
|
PhosphoSitePlus |
http://www.phosphosite.org/homeAction.do |
141 |
|
PhosphoNET |
http://www.phosphonet.ca/ |
|
|
HPRD release 7 |
http://www.hprd.org/ |
139 |
|
PHOSIDA |
http://www.phosida.de/ |
142 |
|
PhosphoPep v2.0 |
http://www.phosphopep.org/ |
143 |
|
PhosPhAt 2.2 |
http://phosphat.mpimp-golm.mpg.de/ |
144 |
|
P(3) DB |
http://digbio.missouri.edu/p3db/ |
145 |
|
Swiss-Prot knowledge base |
http://www.expasy.org/ |
136 |
|
dbPTM 2.0 |
http://dbptm.mbc.nctu.edu.tw/ |
146 |
|
SysPTM 1.1 |
http://www.biosino.org.cn/SysPTM/ |
147 |
|
PhosphoPOINT |
http://kinase.bioinformatics.tw/ |
140 |
|
NetworKIN 1.0 |
http://networkin.info/search.php |
148 |
|
Phospho3D |
http://cbm.bio.uniroma2.it/phospho3d/ |
149 |
|
PepCyber:P~Pep 1.1 |
http://pepcyber.umn.edu/PPEP/ |
150 |
|
PhosphoVariant |
http://www.nih.go.kr/phosphovariant/html/PhosphoVariant.htm |
151 |
Prediction of non-specific
or organism-specific
phosphorylation sites |
NetPhos 2.0 |
http://www.cbs.dtu.dk/services/NetPhos/ |
152 |
| CRP |
http://fasta.bioch.virginia.edu/crp/ |
153 |
| DISPHOS 1.3 |
http://core.ist.temple.edu/pred/ |
154 |
|
NetPhosYeast 1.0 |
http://www.cbs.dtu.dk/services/NetPhosYeast/ |
155 |
|
NetPhosBac 1.0 |
http://www.cbs.dtu.dk/services/NetPhosBac-1.0/ |
156 |
|
PhosPhAt 2.2 |
http://phosphat.mpimp-golm.mpg.de/ |
144 |
|
PHOSIDA |
http://www.phosida.de/ |
142 |
|
GANNPhos |
|
157 |
|
PHOSITE |
|
158 |
Prediction of kinase-specific
phosphorylation sites or
phospho-binding motifs |
ScanProsite |
http://www.expasy.org/prosite/ |
159,160
|
| ELM |
http://elm.eu.org/ |
161 |
| Minimotif Miner |
http://mnm.engr.uconn.edu/MNM/SMSSearchServlet |
162 |
|
PhosphoMotif Finder |
http://www.hprd.org/PhosphoMotif_finder |
163 |
|
PREDIKIN 1.0 |
http://florey.biosci.uq.edu.au/kinsub/predikin.htm |
164 |
|
Predikin and PredikinDB 2.0 |
|
165 |
|
ScanSite 2.0 |
http://scansite.mit.edu/ |
166 |
|
NetPhosK 1.0 |
http://www.cbs.dtu.dk/services/NetPhosK/ |
167 |
|
PredPhospho 1.0 |
http://www.nih.go.kr/predphospho/proteo/html/inc_PredPhospho.htm |
168 |
|
PredPhospho 2.0 |
http://www.nih.go.kr/phosphovariant/html/seq_input_predphospho2.htm |
151 |
|
GPS 2.1 |
http://gps.biocuckoo.org/ |
169 |
|
PPSP 1.0 |
http://ppsp.biocuckoo.org/ |
170 |
|
KinasePhos 2.0 |
http://kinasephos.mbc.nctu.edu.tw/ |
171 |
|
PhoScan |
http://bioinfo.au.tsinghua.edu.cn/phoscan/ |
172 |
|
pkaPS |
http://mendel.imp.ac.at/sat/pkaPS/ |
173 |
|
CRPhos 0.8 |
http://www.ptools.ua.ac.be/CRPhos/ |
174 |
|
AutoMotif 2.0 |
http://ams2.bioinfo.pl/ |
175 |
|
MetaPredPS |
http://metapred.umn.edu/MetaPredPS/index.php |
176 |
|
SMALI |
http://lilab.uwo.ca/SMALI.htm |
177,178
|
|
NetPhorest |
http://netphorest.info/ |
179 |
|
SiteSeek |
|
180 |
| Miscellaneous tools |
Motif-X |
http://motif-x.med.harvard.edu/motif-x.html |
181 |
|
Scan-X |
http://motif-x.med.harvard.edu/scan-x.html |
182 |
|
MoDL |
http://cs.brown.edu/people/braphael/software.html |
183 |
|
PhosphoBlast |
http://phospho.elm.eu.org/pELMBlastSearch.html |
184 |
|
RLIMS-P |
http://pir.georgetown.edu/pirwww/iprolink/rlimsp.shtml |
31,185
|
|
KEA |
http://amp.pharm.mssm.edu/lib/kea.jsp |
186 |
|
DOG 1.0 |
http://dog.biocuckoo.org/ |
187 |
Detection of potential
phosphorylation sites
from MS data |
PhosphoScore |
http://dir.nhlbi.nih.gov/papers/lkem/phosphoscore/ |
188 |
| Ascore |
http://ascore.med.harvard.edu/ |
189 |
| Colander |
http://fields.scripps.edu/download.php |
190 |
|
DeBunker |
http://fields.scripps.edu/download.php |
191 |
|
APIVASE 2.2 |
http://bioanalysis.dicp.ac.cn/proteomics/software/APIVASE.html |
192 |
|
InsPecT |
http://proteomics.ucsd.edu/LiveSearch/ |
193 |
|
Phosphopeptide FDR Estimator |
http://omics.pnl.gov/software/PhosphoFDREstimator.php |
194 |
|
PhosTShunter |
|
195 |
|
PhosphoScan |
|
196 |
