Table 2. qPCR validation of 11 genes that were differentially regulated in the microarray analysis.
RNA samples submitted to microarray and qPCR analysis | RNA samples submitted only to qPCR analysis | ||||||||||||||
ΔCta | ΔCta | ||||||||||||||
Gene | Accession | Endometrium | Blood | Ste | ΔΔCtb | Foldchange | P | MCc | Endometrium | Blood | Ste | ΔΔCtb | Foldchange | P | MCc |
PAG10 | NM_176621 | 8.2 | 18.7 | 0.1 | −10.4 | 1389 | 0.0003 | Confirmed | 7.5 | 19.1 | 1.2 | −11.5 | 2964.0 | 0.002 | Confirmed |
GZMA | NM_001001142 | 6.8 | 16.5 | 0.9 | −9.8 | 867 | 0.0112 | Confirmed | 7.7 | 16.1 | 1.5 | −8.3 | 322.5 | 0.016 | Confirmed |
HMOX1 | NM_001014912 | 12.4 | 16.8 | 0.1 | −4.4 | 22 | 0.0002 | Confirmed | 11.9 | 16.0 | 1.3 | −4.1 | 17.5 | 0.000 | Confirmed |
MRC1 | XM_001252128 | 15.7 | 18.4 | 0.5 | −2.7 | 6.7 | 0.0009 | Confirmed | 15.7 | 18.6 | 0.6 | −3.0 | 7.8 | 0.065 | Same direction |
TSGA14 | XM_583431 | 13.0 | 14.5 | 0.1 | −1.5 | 2.9 | 0.0064 | Confirmed | 13.1 | 14.2 | 1.1 | −1.1 | 2.1 | 0.523 | Confirmed |
CD16a | NM_001077402 | 10.1 | 11.0 | 0.2 | −0.9 | 1.9 | 0.0115 | Confirmed | 11.4 | 11.1 | 1.4 | 0.3 | 1.2 | 0.889 | Opposite direction |
CD163 | XM_613380 | 12.4 | 13.1 | 0.2 | −0.7 | 1.6 | 0.0115 | Confirmed | 12.1 | 12.0 | 1.4 | 0.2 | 1.1 | 0.938 | Opposite direction |
PTX3 | XM_614752 | 16.4 | 16.9 | 0.2 | −0.5 | 1.4 | 0.0156 | Opposite direction | 17.4 | 16.4 | 0.6 | 1.0 | 2.0 | 0.351 | Same direction |
MCP1 | NM_174006 | 15.2 | 15.3 | 0.1 | 0.0 | 1.0 | 0.0002 | Opposite direction | 15.4 | 14.5 | 2.3 | 0.8 | 1.8 | 0.814 | Same direction |
RNASE6 | NM_174594 | 14.5 | 16.1 | 0.5 | −1.6 | 3.0 | 0.1567 | Same direction | 11.1 | 14.2 | 1.0 | −3.2 | 9.0 | 0.079 | Same direction |
SLCO2B1 | NM_174843 | 15.8 | 18.7 | 0.1 | −2.8 | 7.2 | 0.0887 | Same direction | 14.1 | 19.1 | 3.4 | −5.0 | 31.3 | 0.365 | Same direction |
ΔCt was calculated by the subtraction of the Ct value for the target gene from the Ct value for the housekeeping gene.
ΔΔCt was calculated by the subtraction of the ΔCt value for the endometrium from the ΔCt value for the blood.
MC = Microarray confirmation.