Table 3. Taxa and their accession numbers used for the different alignments and phylogenetic analyses.
Taxon | SSU rDNA | LSU rDNA | Hsp90 (Hsp+SSU) | Combined (Hsp+SSU) | Combined (Hsp+SSU+LSU) |
Ciliates, apicomplexans & Perkinsus (outgroups) | |||||
Blepharisma ** | M97909 | x | AY390395 | x | x |
Cryptosporidium parvum | AF093489 | AE040725 | AY423866 | included | included |
Eimeria tenella | EF210325 | x | AAB97088 | included | x |
Halteria grandinella | AY00744 | x | AY391253 | included | x |
Paramecium tetraurelia | EF502045 | x | AAG00569 | included | x |
Perkinsus marinus | AF126013 | AY876319 | AY391259 | included | included |
Tetrahymena bergeri | AF364039 | x | AY391257 | included | x |
Tetrahymena pyriformis | EF070254 | x | AAG00567 | included | x |
Theileria parva | AF013418 | AF218825 | AAA30132 | included | included |
Toxoplasma gondii | M97703 | L25635.1 | AAQ24837 | included | included |
Dinoflagellates & Oxyrrhis (ingroup) | |||||
Oxyrrhis marina | x | x | AAR27544 | x | x |
Akashiwo sanguinea | AF276818 | AF260396 | GU295192 | included | included |
Alexandrium tamarense | AB088333 | AY438021 | AM184118 | included | included |
Alex. tamarense UBC | x | x | GU295210 | x | x |
Amphidinium carterae | AF274251 | AY455669 | EU876701 | included | included |
Amphidinium mootonorum | GU295202 | GU295205 | GU295199 | included | included |
Crypthecodinium cohnii | M64245 | FJ939575 | AAM02974 | included | included |
Diplopsalis lenticula | x | EF152794 | GU295193 | x | x |
Gymnodinium chlorophorum | AM184122 | AF200669 | AM184119 | included | included |
Gymnodinium fuscum | AF022194 | AF200676 | GU295194 | included | included |
Gymnodinium simplex | DQ388466 | AF060901 | GU295211 | included | included |
Heterocapsa triquetra | AF022198 | AF260401 | AAR27541 | included | included |
Karenia brevis | AF172714 | AF200677 | AM184117 | included | included |
Karenia mikimotoi | AF022195 | AF200682 | AM184120 | included | included |
Karlodinium micrum | AF172712 | AF200675 | AM184121 | included | included |
Kryptoperidinium foliaceum | AF274268 | EF052684 | AAV32830 | included | included |
Lessardia elongata | AF521100 | x | AY391256 | included | x |
Noctiluca scintillans | AF022200 | x | AB297471 | included | x |
Peridinium willei | AF274272 | AF260384 | GU295195 | included | included |
Polarella glacialis | AF099183 | AY571373 | GU295196 | included | included |
Prorocentrum micans | M14649 | AF260377 | AAR27546 | included | included |
Prorocentrum minimum | AY421791 | AF260379 | GU295201 | included | included |
Protoperidinium crassipes | AB261515 | EF152846 | GU295197 | included | included |
Protoperidinium steidingerae | x | DQ444231 | GU295198 | x | x |
Protoperidinium sp. | x | x | GU295212 | x | x |
Scrippsiella trochoidea | AF274277 | AF260393 | GU295213 | included | included |
Spiniferodinium galeiformis | GU295203 | GU295206 | GU295214 | included | included |
Thecadinium kofoidii | GU295204 | GU295207 | GU295215 | included | included |
Thecadinium yashimaense | AY238477 | GU295209 | GU295200 | included | included |
Togula britannica UBC | x | GU295208 | GU295216 | included | included |
Togula britannica | AY443010 | AY455679 | X | included | included |
**B. intermedium for Hsp90; B. americanum for SSU rDNA.
Accession numbers indicated in bold denotes sequences generated in this study.