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. Author manuscript; available in PMC: 2011 Oct 1.
Published in final edited form as: Arthritis Rheum. 2010 Oct;62(10):2909–2918. doi: 10.1002/art.27594

Figure 3.

Figure 3

Amino acid preferences for A) pocket 1, B) pocket 4, C) pocket 6, and D) pocket 9 of the DR1001 motif. Black bars represent values within 2.5-fold of the reference peptide (RBA ≥ .4, “preferred”), hatched bars represent values between 4-fold and within 10-fold of the reference peptide (0.4 ≥ RBA ≥ 0.1, “tolerated”), and open bars represent values within less than 10-fold of the reference peptide (RBA ≤ 0.1, “excluded”).