. Author manuscript; available in PMC: 2011 Nov 15.

Published in final edited form as: Proteins. 2010 Nov 15;78(15):3197–3204. doi: 10.1002/prot.22790

Table 1.

CAPRI achievements. The table shows the number of near native solutions found in each CAPRI target by all the participating groups, by our automatic webservers and by our group. The solutions are divided into three accuracy levels: high (***), medium (**), and acceptable (*). Cases without any solution are marked by ‘-’ and cases in which we did not submit any models are marked by ‘X’.

Target	All groups			PatchDock/ SymmDock^a			FireDock/FiberDock^a			Human Prediction^b			CAPRI retry^c			Scoring^d

	***	**	*	***	**	*	***	**	*	***	**	*	***	**	*	***	**	*
T29	-	9	8	-	-	-	X	X	X	-	-	-	-	1	-	-	-	2
T30	-	-	2	-	-	-	X	X	X	-	-	-	-	-	1	-	-	-
T32	15	13	6	-	-	-	-	-	-	2	2	2	X	X	X	-	-	-
T33	-	-	-	-	-	-	-	-	-	-	-	-	X	X	X	-	-	-
T34	-	25	40	-	-	2 ^†	X	X	X	-	-	3^† +1	X	X	X	X	X	X
T35	-	-	1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
T36	-	-	1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
T37	1	7	13	-	-	-	-	-	-	-	-	1	X	X	X	-	1 ^†	1+1 ^†
T38	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
T39	1	2	-	-	-	-	-	-	-	-	-	-	-	1	-	-	-	-
T40	79	54	31	-	-	-	1	-	1	3	-	3	X	X	X	5	2	1
T41	24	58	67	X	X	X	1	9	-	-	7	3	X	X	X	X	X	X
T42	9	5	6	1	-	-	X	X	X	1	-	1	X	X	X	X	X	X

The achievements of our webservers: PatchDock/SymmDock (SymmDock was used only in target 42) and FireDock/FiberDock (FiberDock was first used in target 40).

The achievements of our group, where we used the full docking protocol, described in the Methods section.

We analyzed six cases in which we failed and retried to dock the targets. In three of these targets we had a near native result in the top 10 solutions (see the Results section for details).

Our achievements in the Scoring challenge of CAPRI.

^†

- Accurate results that were disqualified due to clashes or bad sequence identity.