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. 2010 Aug 8;38(18):e176. doi: 10.1093/nar/gkq672

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© The Author(s) 2010. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 1. — Kink-turn motif. (a) 3D structure. (b) 2D diagram for base-pairing patterns (notation is the same as proposed in (18)). (c) and (d) Arc representations built by concatenating the two strands of the motif with two different orders. For (c) and (d), the arcs rest above on the horizontal line represents the base pairs that are optimally aligned in the first step, while the arcs below are processed in the second step. The motif is from a 23S rRNA in H. marismortui (1S72, chain `0', location 77-82/92-100).