Table 2.
The performance of RNAMotifScan with different resolutions of RNA structures
| PDB ID | Resolution | Length | #bp | #Can. bp | #Non-can. bp | #KT | #CL | #SR | #RK | #EL |
|---|---|---|---|---|---|---|---|---|---|---|
| 2VQE | 2.50 Å | 1522 | 766 | 433 | 333 | 3 | 0 | 2 | 0 | 6 |
| 1J5E | 3.05 Å | 1522 | 761 | 434 | 327 | 2 | 0 | 2 | 0 | 6 |
| 1I95 | 4.50 Å | 1514 | 699 | 422 | 277 | 1 | 0 | 0 | 0 | 3 |
The columns in the tables represent PDB codes of the RNA structures, the resolution, the length, the number of base pairs (bp) annotated by MC-Annotate, the number of annotated canonical base pairs (Can. bp), the number of annotated non-canonical base pairs (Non-can. bp), the number of kink-turn (KT), C-loop (CL), sarcin–ricin (SR), reverse kink-turn (RK) and E-loop (EL) being identified. All structures are Thermus thermophilus 16S rRNA structures. The P-value cutoffs are the same as those shown in Table 3.