Table 3.
Summary of the RNAMotifScan search results against the entire PDB comparing with SCOR (40)
| Motif | P-value cutoff | PDB | NR PDB | SCOR |
|---|---|---|---|---|
| Kink-turn | 0.07 | 553 | 39 | 195 |
| C-loop | 0.04 | 167 | 18 | – |
| Sarcin–ricin | 0.02 | 633 | 46 | 107 |
| Reverse kink-turn | 0.14 | 56 | 3 | – |
| E-loop | 0.13 | 1356 | 148 | 37 |
C-loop and reverse kink-turn are not included in SCOR. Motifs characterized in SCOR were from the entire PDB released by October. 24, 2004. The non-redundant set (NR PDB) is constructed by removing entries with sequence identities >90%.