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. Author manuscript; available in PMC: 2010 Oct 12.
Published in final edited form as: ChemMedChem. 2009 May;4(5):866–876. doi: 10.1002/cmdc.200900043

Table 4.

MM/PBSA analysis of the relative binding affinities [kcal mol−1] of compound 15 in the X-ray-like binding mode B and the alternative pose A.[a]

Mode ΔGele ΔGSAS ΔGvdW ΔΔGint ΔΔGbind
Alternative 11.0 (ε = 2) −1.7 −39.9 3.5 −2.7
(A) 2.6 (ε = 4)
X-ray-like 10.9 (ε = 2) −1.8 −33.5 0.0 0.0
(B) 2.6 (ε = 4)
[a]

Poses shown in Figure 5.