TABLE 1.
Description | Value(s) for fosmid no.: |
Value(s) for fosmid no.: |
|||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
246 | 162 | 282 | 89 | 148 | 164 | 253 | 59 | 66 | 70 | 92 | 98 | 126 | 213 | 259 | 270 | 293 | |
Subdivision | —c | 1 | 1 | 3 | 4 | 4 | 4 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 |
Length | 32,608 | 36,502 | 29,311 | 31,620 | 30,784 | 33,664 | 33,004a | 37,659 | 29,899 | 33,759 | 33,281 | 30,831a | 28,124 | 35,443 | 31,287a | 38,585a | 36,563a |
No. of gaps | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 3 | 4 |
% GC | 57.7 | 58.7 | 55.5 | 59.3 | 70.3 | 54.4 | 53.8 | 64.5 | 63.4 | 62.7 | 62.7 | 65.5 | 66.3 | 65.2 | 65.9 | 65.0 | 69.2 |
% GC in ORF | 57.4 | 60.8 | 59.9 | 71.1 | 55.2 | 53.6 | 65.9 | 64.8 | 63.9 | 63.8 | 67.6 | 67.9 | 67.1 | 68.3 | |||
No. of ORF | 28 | 30 | 26 | 28 | 26 | 29 | 23 | 26 | 20 | 27 | 22 | 26 | 19 | 21 | 27 | 30 | 36 |
No. ORFs matching nonhypothetical proteins | 13 | 20 | 17 | 14 | 10 | 14 | 13 | 13 | 9 | 12 | 5 | 20 | 5 | 10 | 13 | 15 | 24 |
No. of ORFs matching hypothetical proteinsb | 3/12 | 3/7 | 3/6 | 10/4 | 3/13 | 3/12 | 4/6 | 6/7 | 6/5 | 10/5 | 7/10 | 4/2 | 7/7 | 5/6 | 5/9 | 11/4 | 3/9 |
No. of tRNAs | 4 | 2 | 3 | 2 | 1 | 4 | 3 | 2 | 2 | 2 | 2 | 2 | 0 | 2 | 2 | 2 | 1 |
Type(s) of rRNA | 5S, 16S, 23S | 5S, 16S, 23S | 5S, 16S, 23S | 5S, 16S, 23S | 16S | 5S, 16S, 23S | 5S, 16S, 23S | 5S, 16S, 23S | 5S, 16S, 23S | 5S, 16S, 23S | 5S, 16S, 23S | 5S, 16S, 23S | 5S, 16S, 23S | 5S, 16S, 23S | 5S, 16S, 23S | 5S, 16S, 23S | 5S, 16S, 23S |
Length of recovered sequences without gap length estimation.
Number of ORFs with best matches to hypothetical proteins or proteins of unknown function/number of ORFs without any close match in the database.
—, subdivision designation unclear.