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. 2010 Aug 20;76(20):6769–6777. doi: 10.1128/AEM.00343-10

TABLE 1.

General characteristics of acidobacterial fosmid clones

Description Value(s) for fosmid no.:
Value(s) for fosmid no.:
246 162 282 89 148 164 253 59 66 70 92 98 126 213 259 270 293
Subdivision c 1 1 3 4 4 4 6 6 6 6 6 6 6 6 6 6
Length 32,608 36,502 29,311 31,620 30,784 33,664 33,004a 37,659 29,899 33,759 33,281 30,831a 28,124 35,443 31,287a 38,585a 36,563a
No. of gaps 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 3 4
% GC 57.7 58.7 55.5 59.3 70.3 54.4 53.8 64.5 63.4 62.7 62.7 65.5 66.3 65.2 65.9 65.0 69.2
% GC in ORF 57.4 60.8 59.9 71.1 55.2 53.6 65.9 64.8 63.9 63.8 67.6 67.9 67.1 68.3
No. of ORF 28 30 26 28 26 29 23 26 20 27 22 26 19 21 27 30 36
No. ORFs matching nonhypothetical proteins 13 20 17 14 10 14 13 13 9 12 5 20 5 10 13 15 24
No. of ORFs matching hypothetical proteinsb 3/12 3/7 3/6 10/4 3/13 3/12 4/6 6/7 6/5 10/5 7/10 4/2 7/7 5/6 5/9 11/4 3/9
No. of tRNAs 4 2 3 2 1 4 3 2 2 2 2 2 0 2 2 2 1
Type(s) of rRNA 5S, 16S, 23S 5S, 16S, 23S 5S, 16S, 23S 5S, 16S, 23S 16S 5S, 16S, 23S 5S, 16S, 23S 5S, 16S, 23S 5S, 16S, 23S 5S, 16S, 23S 5S, 16S, 23S 5S, 16S, 23S 5S, 16S, 23S 5S, 16S, 23S 5S, 16S, 23S 5S, 16S, 23S 5S, 16S, 23S
a

Length of recovered sequences without gap length estimation.

b

Number of ORFs with best matches to hypothetical proteins or proteins of unknown function/number of ORFs without any close match in the database.

c

—, subdivision designation unclear.