TABLE 3.
Tree statistics for the individual and combined partitions
| Locus | No. of bp | PICa | PIC/no. of bp | AUTb | No. of MPTsc | MPT length | CId | RIe |
|---|---|---|---|---|---|---|---|---|
| EF-1αf | 632 | 284 | 0.45 | 43 | >10,000 | 1,183 | 0.47 | 0.869 |
| RPB1 | 1,607 | 603 | 0.38 | 52 | 24 | 2,590 | 0.34 | 0.851 |
| RPB2 5 × 7g | 882 | 379 | 0.43 | 26 | 13 | 1,475 | 0.43 | 0.879 |
| RPB2 7 × 11h | 860 | 265 | 0.31 | 30 | 618 | 1,272 | 0.35 | 0.83 |
| RPB2 5 × 7 and 7 × 11 | 1,742 | 644 | 0.37 | 56 | 1,000 | 2,789 | 0.39 | 0.855 |
| RPB1 + RPB2 | 3,349 | 1,247 | 0.37 | 108 | 1 | 5,447 | 0.38 | 0.85 |
| EF-1α + RPB1 + RPB2 | 3,981 | 1,531 | 0.38 | 151 | 4 | 6,683 | 0.4 | 0.852 |
PIC, parsimony-informative character (i.e., shared derived nucleotide position or synapomorphy).
AUT, autapomorphy or a derived character unique to a particular taxon (i.e., not parsimony informative).
MPT, most parsimonious tree (i.e., shortest tree inferred from the DNA sequence data).
CI, consistency index. This index provides a metric of how much noise is in a data set. The CI is calculated by dividing the minimum possible number of steps by the observed number of steps.
RI, retention index. Like the CI, this metric provides a measure of how much noise is in a data set. Unlike the CI, the RI measures the amount of parsimony-informative characters from a data set that are reflected in the phylogenetic tree.
Ninety-two ambiguously aligned positions were excluded from the EF-1α partition.
Region PCR amplified by primers 5f2 and 7cr (Table 2).
Region PCR amplified by primers 7cf and 11ar (Table 2).