TABLE 2.
Sequential position of secondary structure elements in the PstDNV capsid proteina
| SSECPVb | SSEPSTc | Amino acid positions in PstDNV |
|---|---|---|
| βB | 44-60 | |
| βC | 69-74 | |
| αCD1 | 79-83 | |
| βCD1.1 | 84-87 | |
| βCD1.2 | 92-95 | |
| αCD2d | 96-110 | |
| βD | 111-132 | |
| βDE1 | 136-142 | |
| βE | 148-153 | |
| βEF0.1 | 160-165 | |
| αEF1.1 | 170-177 | |
| βEF2 | 179-183 | |
| αEF6e | 191-197 | |
| βF | 199-203 | |
| βG | 207-215 | |
| βG2 | 220-222 | |
| βH | 264-269 | |
| βI | 280-297 | |
| 310I1 | 306-310 | |
| βI1.1 | 311-313 | |
| βI1.2 | 321-325 |
a
Conserved parvoviral secondary elements (β-barrel and αA) are indicated by boldface type.
b
SSECPV, secondary structure elements as defined for CPV by Xie and Chapman (44) that structurally align with PstDNV.
c
SSEPST, additional secondary structure elements designated for PstDNV.
d
Also referred to as α-helix A.
e
Also referred to as α-helix B.