Table 1.
Most detected proteins from R. pomeroyi exoproteome.
| Accession | Function | # peptides | # MS/MS | Signal Peptide prediction |
|---|---|---|---|---|
| Most abundant proteins detected | ||||
| YP_165496 | PaxA, putative | 45 | 2610 | absence |
| YP_165625 | type I secretion target repeat-containing protein | 48 | 359 | absence |
| YP_168868 | type I secretion target repeat-containing protein | 37 | 164 | absence |
| Proteins ABC and TRAP transporters | ||||
| YP_168968 | oligopeptide/dipeptide ABC transporter, periplasmic | 13 | 58 | presence |
| YP_168022 | peptide/opine/nickel uptake ABC transporter periplasmic | 16 | 54 | presence |
| YP_168201 | peptide/nickel/opine uptake ABC transporter periplasmic | 10 | 42 | presence * |
| YP_165781 | glutamate/glutamine/aspartate/asparagine ABC transporter, periplasmic | 10 | 39 | presence * |
| YP_168669 | polyamine ABC trasnporter, periplasmic polyamine-binding protein | 6 | 28 | presence |
| YP_165868 | sugar ABC transporter, periplasmic sugar-binding protein | 7 | 24 | presence |
| YP_167838 | TRAP transporter solute receptor DctP family protein | 6 | 19 | presence |
| YP_167174 | branched-chain amino acid ABC transporter, periplasmic | 4 | 14 | presence |
| YP_167412 | TRAP transporter solute receptor TAXI family protein | 5 | 13 | presence |
| YP_165067 | TRAP dicarboxylate transporter, DctP subunit | 4 | 13 | presence |
| YP_165642 | sugar ABC transporter, periplasmic sugar-binding protein | 3 | 12 | presence |
| YP_166898 | oligopeptide/dipeptide ABC transporter, periplasmic | 2 | 10 | presence * |
| YP_166382 | glycine betaine/proline ABC transporter, periplasmic | 2 | 5 | presence |
| YP_165960 | oligopeptide ABC transporter, periplasmic | 3 | 4 | presence |
| YP_166114 | xylose ABC transporter, periplasmic xylose-binding protein | 2 | 2 | presence |
| YP_167025 | ABC transporter, periplasmic substrate-binding protein | 2 | 2 | presence |
| Other proteins with predicted signal peptide | ||||
| YP_165456 | hypothetical protein SPO0186 | 10 | 37 | presence |
| YP_167495 | 3-oxoacyl-(acyl carrier protein) synthase II | 4 | 21 | presence |
| YP_167459 | peptidyl-prolyl cis-trans isomerase, cyclophilin-type | 6 | 20 | presence |
| YP_165903 | bmp family protein | 4 | 14 | presence |
| YP_165402 | cytochrome c family protein | 4 | 12 | presence |
| YP_165589 | acetyl-CoA acetyltransferase | 4 | 9 | presence |
| YP_168626 | outer membrane porin | 3 | 7 | presence |
| YP_167817 | solute-binding family 7 protein | 2 | 5 | presence |
| YP_167786 | solute-binding family 7 protein | 3 | 4 | presence |
| YP_167503 | hypothetical protein SPO2279 | 2 | 4 | presence |
*
Proteins/genes that have been re-annotated.