Table 2. Sequences, abundance and homologues of top ten predicted conserved miRNA candidates in five small RNA libraries.
Name | Sequence | Counts/Mb | Homologues* | ||||
ZJ | ZJ-COLD | ZJ-DJ3 | CAN | USA | |||
miR-100 | AACCCGUAGAUCCGAACUUGUGU | 9,798.0 | 234.8 | 150.0 | 9,283.8 | 12,227.3 | hsa-miR-100 |
miR-1 | UGGAAUGUAAAGAAGUAUGUAG | 1,133.8 | 3,823.0 | 587.9 | 1,342.1 | 1,052.7 | cel-miR-1 |
let-7 | UGAGGUAGUAGGUUGUAUAGUU | 360.2 | 1,307.8 | 507.0 | 302.9 | 482.1 | cel-let-7 |
miR-71 | UGAAAGACAUGGGUAGUGA | 79.9 | 21.7 | 63.0 | 86.3 | 87.3 | cel-miR-71 |
miR-34 | UGGCAGUGUGGUUAGCUGGUUG | 62.2 | 84.2 | 248.7 | 49.7 | 42.7 | cel-miR-34 |
miR-72 | AGGCAAGAUGUUGGCAUAGCUGA | 49.0 | 270.8 | 271.5 | 67.9 | 60.4 | cel-miR-72 |
miR-252 | CUAAGUAGUAGUGCCGCAGGUAA | 30.7 | 58.3 | 16.3 | 29.7 | 40.4 | cel-miR-252 |
miR-87 | GUGAGCAAAGUUUCAGGUGUGC | 7.3 | 8.5 | 6.5 | 10.6 | 4.1 | cel-miR-87 |
miR-86 | UAAGUGAAUACUUUGCCACAGUC | 3.8 | 4.9 | 1.2 | 4.4 | 4.7 | cel-miR-86 |
miR-50 | UGAUAUGUCUAGUAUUCUUGGG | 3.8 | 1.6 | 3.0 | 5.9 | 4.8 | cel-miR-50 |
Note: * Homologues are identified by homology search in miRBase (release 14.0). cel, C. elegans; hsa, H. sapiens.