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. Author manuscript; available in PMC: 2011 Aug 16.
Published in final edited form as: Chembiochem. 2010 Aug 16;11(12):1762–1768. doi: 10.1002/cbic.201000287

Table 1.

Oligonucleotides used in the study[a]

Name Sequence Purification
UMB FAM-5′-CGC GTT AAC ATA CAA TAG ATC
GCG-BHQ1
double
HPLC
UMB FAM-5′-CGC GTT AAC ATA CAA TAG ATC
GCG
HPLC
C18 5′-GAT CTA TTG TAT GTT AAC SD[b]
C22 5′-GC GAT CTA TTG TAT GTT AAC GC SD
C24 5′-CGC GAT CTA TTG TAT GTT AAC GCG SD
BDP rs14-f 5′-CCT GCT CTG AGG CCA GC/TEG/TAT
GTT AAC
SD
BDP rs14m-A 5′-GAT CTA TTG/TEG/CAG TTT TGC SD
BDP rs14m-G 5′-GAT CTA TTG/TEG/CAG TTC TGC SD
BDP rs71-f 5′-ACC TAA TGA CAG ACG T/TEG/TAT
GTT AAC
SD
BDP rs71m-A 5′-GAT CTA TTG/TEG/TCA CTA CAC SD
BDP rs71m-G 5′-GAT CTA TTG/TEG/TCA CCA CAC SD
BDP rs87-f 5′-TA GCA GAG TGT GAC AAA/TEG/TAT
GTT AAC
SD
BDP rs87m-C 5′-GAT CTA TTG/TEG/AAA TGT ACT SD
BDP rs87m-T 5′-GAT CTA TTG/TEG/AAA TAT ACT SD
rs14-G 5′-ACT GGG CTG ATG TGG GTT CTT TGC
AGA ACT G GC TGG CCT CAG AG C AGG GA
SD
rs14-A 5′-ACT GGG CTG ATG TGG GTT CTT TGC
AAA ACT G GC TGG CCT CAG AG C AGG GA
SD
rs71-A 5′-GAA AGG CAT ATC GTA TTA ACT GTG
TAG TGA ACG TCT GTC ATT AGG TTT AGC
SD
rs71-G 5′-GAA AGG CAT ATC GTA TTA ACT GTG
TGG TGA ACG TCT GTC ATT AGG TTT AGC
SD
rs87-C 5′-ATA CCA CTG CAC TGA AGT ATA AGT
ACA TTT TTT GTC ACA CTC TGC TA A CT
SD
rs87-T 5′-ATA CCA CTG CAC TGA AGT ATA AGT
ATA TTT TTT GTC ACA CTC TGC TAA CT
SD
[a]

Stem-forming nucleotides of MB probe are shown in italics, “/TEG/” indicates triethylene glycol linker inserts; the underlined nucleotides indicate the SNP sites and the positions complementary to SNPs.

[b]

SD is standard desalting.