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. 2010 Aug 4;66(Pt 10):1237–1244. doi: 10.1107/S1744309110025534

Table 1. Summary of crystal parameters, data-collection and refinement statistics for YP_001813558.1 (PDB code 3nl9).

Values in parentheses are for the highest resolution shell.

  λ1 MADSe λ2 MADSe
Crystal parameters
 Space group C2
 Unit-cell parameters (Å, °) a = 52.09, b = 69.04, c = 50.21, β = 111.8
 Mosaicity (°) 0.91
Data collection
 Wavelength (Å) 1.0000 0.9798
 Resolution range (Å) 39.6–1.78 (1.83–1.78) 39.6–1.78 (1.83–1.78)
 No. of observations 43073 43110
 No. of unique reflections 15531 15528
 Completeness (%) 98.1 (97.9) 98.1 (97.3)
 Mean I/σ(I) 9.8 (2.1) 8.6 (1.8)
Rmerge on I 0.069 (0.555) 0.082 (0.563)
Rmeas on I 0.086 (0.687) 0.102 (0.698)
Rp.i.m. on I§ 0.050 (0.401) 0.059 (0.408)
 Overall B factor from Wilson plot (Å2) 21.3 21.0
Model and refinement statistics
 Data set used in refinement λ1 MADSe
 Resolution range (Å) 39.6–1.78
 No. of reflections (total) 15531
 No. of reflections (test) 788
 Completeness (%) 97.8
 Cutoff criterion |F| > 0
Rcryst 0.177
Rfree†† 0.222
Stereochemical parameters
 Restraints (r.m.s.d. observed)
  Bond angles (°) 1.30
  Bond lengths (Å) 0.015
 Average protein isotropic B value (Å2) 26.0‡‡
 Average solvent isotropic B value (Å2) 33.6
 ESU§§ based on Rfree (Å) 0.14
 Protein residues/atoms 169/1340
 Water/cryoprotectant molecules 141/2

R merge = Inline graphic Inline graphic.

The redundancy-independent (multiplicity-weighted) merging R factor, R meas = Inline graphic Inline graphic Inline graphic (Diederichs & Karplus, 1997).

§

The precision-indicating merging R factor, R p.i.m. = Inline graphic Inline graphic (Weiss & Hilgenfeld, 1997; Weiss et al., 1998).

R cryst = Inline graphic Inline graphic, where F calc and F obs are the calculated and observed structure-factor amplitudes, respectively,

††

R free is the same as R cryst but for 5.1% of the total reflections chosen at random and omitted from refinement

‡‡

This value represents the total B and includes both TLS and residual B components.

§§

Estimated overall coordinate error (Collaborative Computational Project, Number 4, 1994; Cruickshank, 1999).