Table 4.
Deduced VP8* amino acid (bottom left) and nucleotide (upper right) percentage identity of Ghanaian G10P[6] strains to selected human and animal rotavirus P[6] strains
| Strain | %Identity with strain | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86 | 402 | Au19 | BP720/93 | BP1198/98 | BP1231/02 | BP1338/99 | MW23 | ST3 | US1205 | M37 | *Gottfried | *JP3-6 | |
| 86 | 99.7 | 79.8 | 84.2 | 84.6 | 83.9 | 84.8 | 96.7 | 93.7 | 96.8 | 94.4 | 80.4 | 81.2 | |
| 402 | 99.9 | 79.8 | 83.9 | 84.4 | 83.7 | 84.7 | 96.2 | 93.5 | 96.2 | 94.1 | 79.7 | 81.4 | |
| AU19 | 80.7 | 80.7 | 80.4 | 82.4 | 80.0 | 82.6 | 79.6 | 79.0 | 80.4 | 79.8 | 75.2 | 89.2 | |
| BP720/93 | 84.5 | 83.3 | 78.6 | 85.9 | 98.4 | 86.1 | 83.9 | 84.5 | 84.4 | 84.4 | 80.6 | 84.1 | |
| BP1198/98 | 88.3 | 86.3 | 79.3 | 85.3 | 85.5 | 98.3 | 84.8 | 84.9 | 85.1 | 84.5 | 80.4 | 85.5 | |
| BP123/02 | 86.0 | 84.8 | 84.5 | 93.2 | 83.7 | 85.6 | 84.2 | 84.5 | 84.4 | 84.4 | 80.6 | 83.9 | |
| BP1338/99 | 88.4 | 86.4 | 85.2 | 86.6 | 98.6 | 93.6 | 85.0 | 84.8 | 85.3 | 84.7 | 80.3 | 85.5 | |
| MW23 | 96.1 | 94.7 | 73.8 | 61.6 | 80.6 | 68.4 | 73.9 | 95.5 | 97.1 | 95.3 | 89.2 | 82.1 | |
| ST3 | 93.8 | 92.4 | 73.8 | 63.3 | 84.5 | 70.1 | 77.3 | 96.1 | 95.7 | 97.8 | 89.3 | 82.3 | |
| US1205 | 96.1 | 94.7 | 74.8 | 62.9 | 82.6 | 69.5 | 75.6 | 97.5 | 96.9 | 95.6 | 89.9 | 82.5 | |
| M37 | 93.8 | 92.4 | 73.8 | 63.3 | 84.5 | 70.1 | 77.3 | 96.1 | 100 | 96.9 | 89.3 | 88.6 | |
| Gottfried | 79.8 | 78.0 | 70.9 | 61.6 | 78.1 | 67.9 | 72.2 | 82.7 | 82.3 | 83.1 | 82.5 | 79.4 | |
| JP3-6 | 85.3 | 84.1 | 89.8 | 90.0 | 90.7 | 92.1 | 91.4 | 85.0 | 88.6 | 84.4 | 82.5 | 85.0 | |
The GenBank accession numbers of selected P[6] strains are: 86/Hu/Ghana (AY843335); 402/Hu/Ghana (AY843334); AU19/Hu/Japan (AB017917); BP720/93/Hu/Hungary (AJ621503); BP1198/98/Hu/Hungary (AJ621504); BP1231/02/Hu/Hungary (AJ621506); BP1338/99/Hu/Hungary(AJ621507); Gottfried/Po/US (M33516); MW23/Hu/Malawi (AJ278253); ST3/Hu/UK (L33895); US1205/Hu/US (AF079356); JP3-6/Po/Japan (AB176685); M37/Hu/Venezuela (L20877)
*
= Animal strains