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. 2010 Aug 11;24(10):2038–2049. doi: 10.1210/me.2010-0234

Table 2.

DNA sequences of oligonucleotide primers for ChIP assays

Gene and domain Location (5′-end) Top strand (5′ to 3′) Bottom strand (5′ to 3′) Amplicon (bp)
Igf1
 5′ −10,054 CCAGCCGTTAAACACCAAGAAG TGCTAGTCCCAGTACAGCATCT 94
 Promoter 1 −1,036 AGCAGGTCTGGCTCATTTCCAT AGATCAGATGCTGCGCTTTCCA 78
 Promoter 1 −541 TAGTGTGTGCCTCCCATACTGCTT TGAGCTCTGGGACAGTCTGAAA 105
 Promoter 1 +10 AAACGCCTCTGTGCTCCAGTTT TCTCTCTCCCTCTTCTGGCAAAGT 104
 R2-4 −86,264 TGAATCTCCAGGGATCACACCA CTCTTGTTGATTTCATCTTTGACCCA 84
 R8-9 −73,096 GTGAGTCTGTGTTAGTCAGG GGTTATGTAAGTCTGATAGAG 93
 R13 −62,806 TGCATTGGCTACCAGGAACTCT GAGACAGTTGGAAGGAAGGATAGA 76
 R34-35 +3,740 GGTGAAACCGCTCACCTTGG TTCTAAGAAGCAGACAGAGG 103
 R53-54 +26,694 TGGCACATGCCATTGACCAGAT AAGGGCAGACCCATCTTTCTGA 102
 R57-59 +43,817 GGCCAATTCATTCGGCAACTGT TCCTTTCTGAGAACTGGAGACCGT 87
 R60-61 +49,147 CCCAACTGAGAAGTAGTAGGCT GAAACAGTCCCGACAACCTATC 105
Socs2
 Promoter −1,155 CCCAAAGTCACAGCTTCAACTAA ACTATTCTGTTGCATCACTGCTCA 73
 Promoter −650 TGAGAGCACTCTGTGCAGCTTT CGCCAGCATCCTAGAAGGTCAA 70
 Promoter −140 TCCCTTGAAGCCTGCGCATTA AACTTTCCAGGAATCCGCCTCA 86
Cish
 Promoter −620 AGTTCTTCGGTTCTCTTAAGCGCC ACACTGCATGAAGGTGGGTGAT 71
 Promoter −227 CTTGGAAATCTGTCAAAGGTG GGAAGCCGCATCTTCCTAGA 113
 Intron 1 +203 TGCGGGATTTGAGAGGGCTTGA TGTGTGTGTGTGTGTGTGTCCT 87
Igfals
 Promoter −607 ACCTTCCCAGACCTGCCTATTT CTGGGTTTCAGGAAGGACAGTT 96
 Promoter −122 CCAGGTGTTCCTAGAAGAGG TTGTCCAAGGCCCAGTCTCAG 95
 Exon 1 +365 AGGGTTAAAGGAGCGAGAGTGT AGCAAGGGCCGTCTACAATACA 106
Spi 2.1
 Promoter −1,116 AAAGGCTACCACTCTGTCCTCA AGATCCCAAACTCCTGTAGCCA 92
 Promoter −618 GGCCTGTAAAGAGTTGTGTTGG TGTTCACCTTACCAATGCCTATCT 74
 Promoter −164 AAGGTGTGCTCAGGAGATCAGT TCGGACAACCTGTGCTTTGTGT 101
Igfbp1
 Promoter −990 CCCTACAACCTTTGCCTTCTCT TGTCCAGCCCTTCAGTGTCTTCA 94
 Promoter −401 AGGAGAGGAAACAACTGTGGGT TTAGACCAAGAAGGCTTCAGGC 83
 Exon 1 +46 ACACAAACCCAGCGAGCATTGA ATAGTAGCGGAAGTGGTGGTCACA 76
Gapdh
 Exon 3 ACTCTACCCACGGCAAGTTCAA ATGGGTTTCCCGTTGATGACCA 73