Table 4.
Discriminative domain families for phenotype category "Endospores"
| rank | weight | # groups | Pfam-ID | Pfam description |
|---|---|---|---|---|
| 1 | 0.008 | 3 | PF03419 | Sporulation factor SpoIIGA |
| 2 | 0.007 | 5 | PF07486 | Cell Wall Hydrolase |
| 3 | 0.007 | 1 | PF06686 | Stage III sporulation protein AC (SpoIIIAC) |
| 4 | 0.007 | 2 | PF00269 | Small, acid-soluble spore proteins, alpha/beta type |
| 5 | 0.007 | 1 | PF07873 | YabP family |
| 6 | 0.007 | 1 | PF09555 | Stage III sporulation protein AD (spore_III_AD) |
| 7 | 0.007 | 3 | PF00407 | Pathogenesis-related protein Bet v I family |
| 8 | 0.007 | 4 | PF00876 | Innexin |
| 9 | 0.007 | 6 | PF04672 | Protein of unknown function (DUF574) |
| 10 | 0.006 | 1 | PF04647 | Accessory gene regulator B |
List of the 10 most (positive) discriminative domain families associated with the RLSC model for the phenotype category "Endospores" (see also section "Methods"). The first column indicates the rank, the second column shows the discriminative model weight. The third column denotes the phylogenetic width of a particular domain family, i.e. the number of taxonomic groups at phylum level in which the family occurs. The fourth and fifth column correspond to the Pfam ID and family description associated with a particular domain family. The table with the 50 most positively and negatively discriminative domain families can be found in additional file 2.