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. 2010 Jun 15;27(11):2465–2473. doi: 10.1093/molbev/msq150

Table 1.

Significant Associations between MSAP Loci and Ecoclimatic Parameters, as Indicated by SAM Analysis (see also fig. 2).

Marker Type Marker
Environmental Variables—SAM Results
BayeScan
I (P)
II (P)
III (P)
log10(BF) PP
Unmethylated a1 144.3 bp BIO6 295 × 10−8 BIO11 313 × 10−8 VapPres 664 × 10−8 1.18 0.9482
a2 174.8 bp VapPres 62 × 10−8 BIO2 268 × 10−8 BIO6 520 × 10−8 1.17 0.9372
a3 260.7 bp BIO6 238 × 10−8 BIO11 390 × 10−8 VapPres 406 × 10−8 0.67 0.8254
a4 312.1 bp BIO8 202 × 10−8 CldCov 218 × 10−8 BIO4 262 × 10−8 1.42 0.9632
MeCpG b1 69.6 bp CldCov 197 × 10−8 BIO8 228 × 10−8 1.47 0.9672
b2 126.7 bp VapPres 169 × 10−8 BIO8 232 × 10−8 BIO2 436 × 10−8 1.59 0.9752
b3 133.9 bp VapPres 206 × 10−8 BIO2 471 × 10−8 BIO4 631 × 10−8 3.7 0.9998
b4 171.7 bp CldCov 158 × 10−8 BIO4 323 × 10−8 BIO8 557 × 10−8 1.67 0.9790
b5 176.1 bp VapPres 59 × 10−8 BIO2 243 × 10−8 BIO6 651 × 10−8 1,000 1.0000
b6 308.8 bp 2.4 0.9960
b7 312.1 bp BIO8 240 × 10−8 CldCov 341 × 10−8 BIO4 411 × 10−8 0.96 0.9006
b8 382.7 bp CldCov 211 × 10−8 BIO4 243 × 10−8 BIO8 246 × 10−8 1.05 0.9176
b9 492.5 bp BIO8 282 × 10−8 BIO4 437 × 10−8 0.58 0.7902
HemiMeCpCpG c1 144.3 bp VapPres 487 × 10−8 2.25 0.9944
c2 315.1 bp VapPres 185 × 10−8 BIO6 262 × 10−8 BIO18 396 × 10−8 0.63 0.6937
c3 367.4 bp 2.92 0.9988

NOTE.—Most MSAP markers were significantly associated with more than one ecoclimatic parameter (only the first three most significant are shown here). Abbreviations: VapPres, vapor pressure (hPa); CldCov, cloud coverage (%); BIO2, mean diurnal range; BIO4, temperature seasonality; BIO6, minimum temperature of coldest month; BIO8, mean temperature of wettest quarter; BIO18, precipitation of warmest quarter; P, significance. Selection type for some of the markers was inferred with BayeScan (see fig. 3).