Table 2.
dbSNP ID | Gene | SNP Typea | Allele (Major/Minor) |
MAF | P for HWE |
Location |
---|---|---|---|---|---|---|
rs2278749 | ARNTL | Tagging | G/A | 0.184 | 0.320 | 11p15 |
rs2290035 | ARNTL | Tagging | A/T | 0.457 | 0.227 | 11p15 |
rs3816360 | ARNTL | Tagging | G/A | 0.353 | 0.706 | 11p15 |
rs4757144 | ARNTL | Tagging | A/G | 0.409 | 0.901 | 11p15 |
rs6486122 | ARNTL | Tagging | T/C | 0.335 | 0.810 | 11p15 |
rs7950226 | ARNTL | Tagging | G/A | 0.457 | 0.356 | 11p15 |
rs11133373 | CLOCK | Tagging | C/G | 0.341 | 0.162 | 4q12 |
rs11133376 | CLOCK | Tagging | T/C | 0.462 | 0.000 | 4q12 |
rs1399953 | CLOCK | Tagging | G/A | 0.266 | 0.850 | 4q12 |
rs17776421 | CLOCK | Tagging | G/A | 0.383 | 0.776 | 4q12 |
rs10778528 | CRY1 | Tagging | T/G | 0.430 | 0.650 | 12q23-q24.1 |
rs10778534 | CRY1 | Tagging | T/C | 0.362 | 0.063 | 12q23-q24.1 |
rs12315175 | CRY1 | Tagging | T/C | 0.194 | 0.954 | 12q23-q24.1 |
rs7297614 | CRY1 | CGEMS | T/C | 0.392 | 0.759 | 12q23-q24.1 |
rs11605924 | CRY2 | Tagging | A/C | 0.472 | 0.035 | 11p11.2 |
rs12281674 | CRY2 | Tagging | A/G | 0.030 | 0.893 | 11p11.2 |
rs2292910 | CRY2 | Tagging | C/A | 0.316 | 0.245 | 11p11.2 |
rs2292912 | CRY2 | Tagging | C/G | 0.217 | 0.619 | 11p11.2 |
rs135757 | CSNK1E | CGEMS | G/A | 0.245 | 0.160 | 22q13.1 |
rs1534891 | CSNK1E | CGEMS | C/T | 0.124 | 0.001 | 22q13.1 |
rs1997644 | CSNK1E | Tagging | A/G | 0.467 | 0.039 | 22q13.1 |
rs5757037 | CSNK1E | Tagging | G/A | 0.369 | 0.039 | 22q13.1 |
rs6001093 | CSNK1E | CGEMS | T/C | 0.184 | 0.172 | 22q13.1 |
rs1369481 | NPAS2 | Tagging | G/A | 0.300 | 0.315 | 2q11.2 |
rs1562313 | NPAS2 | CGEMS | G/A | 0.208 | 0.782 | 2q11.2 |
rs17024926 | NPAS2 | Tagging | T/C | 0.329 | 0.504 | 2q11.2 |
rs2305160 | NPAS2 | AA change | C/T | 0.340 | 0.418 | 2q11.2 |
rs4074920 | NPAS2 | Tagging | A/G | 0.245 | 0.041 | 2q11.2 |
rs7565018 | NPAS2 | Tagging | A/G | 0.236 | 0.725 | 2q11.2 |
rs895521 | NPAS2 | CGEMS | G/A | 0.240 | 0.258 | 2q11.2 |
rs965519 | NPAS2 | Tagging | A/G | 0.153 | 0.657 | 2q11.2 |
rs2253820 | PER1 | Tagging | G/A | 0.154 | 0.881 | 17p13.1-p12 |
rs2289591 | PER1 | Tagging | G/T | 0.243 | 0.495 | 17p13.1-p12 |
rs885747 | PER1 | Tagging | C/G | 0.456 | 0.983 | 17p13.1-p12 |
rs11695472 | PER2 | Tagging | A/C | 0.269 | 0.072 | 2q37.3 |
rs7602358 | PER2 | Tagging | T/G | 0.238 | 0.221 | 2q37.3 |
rs1012477 | PER3 | Tagging | C/G | 0.143 | 0.179 | 1p36.23 |
rs10462020 | PER3 | AA change | T/G | 0.192 | 0.120 | 1p36.23 |
rs11121023 | PER3 | Tagging | G/A | 0.219 | 0.584 | 1p36.23 |
rs228697 | PER3 | AA change | C/G | 0.099 | 0.781 | 1p36.23 |
rs2640909 | PER3 | AA change | T/C | 0.295 | 0.327 | 1p36.23 |
rs2291739 | TIMELESS | AA change | T/C | 0.411 | 0.002 | 12q12-q13 |
rs774027 | TIMELESS | AA change | T/A | 0.453 | 0.456 | 12q12-q13 |
rs774047 | TIMELESS | AA change | C/T | 0.451 | 0.511 | 12q12-q13 |
AA = amino acid, CGEMS = Cancer Genetic Markers of Susceptibility