Table 3.
Type I error rates (in percentage) for tests to identify SNPs that do not partially explain the IBD sharing at a 5% significance level in 9,000 replicates
| Model | p | HST.P | Hori | GIST | HSTMLB.P | LAMP.P |
|---|---|---|---|---|---|---|
| Additive | 0.1 | 4.8 | 4.6 | 2.3 | 4.9 | 5.8 |
| 0.2 | 5.1 | 5.1 | 4.1 | 5.1 | 5.7 | |
| Dominant | 0.1 | 5.0 | 5.0 | 2.8 | 5.0 | 5.2 |
| 0.2 | 5.2 | 4.9 | 4.1 | 5.2 | 6.2 | |
| Multiplicative | 0.2 | 5.1 | 4.9 | 3.7 | 5.1 | 6.8 |
| 0.3 | 5.3 | 5.0 | 4.5 | 5.3 | 6.0 | |
| Recessive | 0.2 | 4.5 | 4.9 | 3.8 | 4.5 | 5.6 |
| 0.3 | 4.7 | 4.7 | 4.3 | 4.7 | 6.7 | |
Results are contrasted with LAMP.P. The approximate 95% confidence intervals that do not contain 0.05 are bolded; the confidence intervals are computed by the observed type I error rate .