Table 4.
Type I error rates (in percentage) for tests to identify SNPs that do not fully explain the IBD sharing at a 5% significance level in 9,000 replicates
| Model | Additive | Dominant | Multiplicative | Recessive | ||||
|---|---|---|---|---|---|---|---|---|
| p | 0.1 | 0.2 | 0.1 | 0.2 | 0.2 | 0.3 | 0.2 | 0.3 |
| HST.F | 5.2 | 4.9 | 4.8 | 4.9 | 5.1 | 5.2 | 5.0 | 5.2 |
| HSTMLB.F | 5.2 | 4.9 | 4.8 | 4.9 | 5.1 | 5.2 | 5.0 | 5.2 |
| LAMP.F | 3.0 | 2.4 | 1.8 | 2.1 | 3.3 | 3.0 | 3.3 | 3.4 |
Results are contrasted with LAMP.F. The approximate 95% confidence intervals for the type I error rates that do not contain 0.05 are bolded.