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. Author manuscript; available in PMC: 2011 Nov 1.
Published in final edited form as: J Mol Cell Cardiol. 2010 Aug 6;49(5):801–811. doi: 10.1016/j.yjmcc.2010.08.002

Table 1.

Pathway analysis of gene identified as significantly changed by surgery or sex.

IPA Analysis of Differential Gene Expression by MI
Top Functions in Identified Networks Score Molecules in Network
graphic file with name nihms228421t1.jpg 53 32
graphic file with name nihms228421t2.jpg 39 26
graphic file with name nihms228421t3.jpg 32 25
graphic file with name nihms228421t4.jpg 32 23
graphic file with name nihms228421t5.jpg 32 23
graphic file with name nihms228421t6.jpg 31 23
graphic file with name nihms228421t7.jpg 28 21
graphic file with name nihms228421t8.jpg 19 18
graphic file with name nihms228421t9.jpg 19 16
graphic file with name nihms228421t10.jpg 16 16
graphic file with name nihms228421t11.jpg 16 14
Organismal injury and abnormalities, molecular transport, cell death 16 14
graphic file with name nihms228421t12.jpg 15 14
graphic file with name nihms228421t13.jpg 14 13
graphic file with name nihms228421t14.jpg 14 13
graphic file with name nihms228421t15.jpg 12 12
graphic file with name nihms228421t16.jpg 12 12
Tumor morphology, cellular development, nervous system
development/function
11 11
graphic file with name nihms228421t17.jpg 10 10
graphic file with name nihms228421t18.jpg 9 11
Molecular transport, protein synthesis, protein trafficking 1 1
Cell-to-cell signaling/interaction, cell morphology, cellular development 1 1
graphic file with name nihms228421t19.jpg 1 1

IPA Analysis of Differential Gene Expression by Sex
Top Functions in Identified Networks

graphic file with name nihms228421t20.jpg 14 6
Neuorological disease, opthalamic disease, dermatologic diseases and
conditions
3 1
graphic file with name nihms228421t21.jpg 3 1
graphic file with name nihms228421t22.jpg 2 1
graphic file with name nihms228421t23.jpg 2 1
graphic file with name nihms228421t24.jpg 2 1

Genes identified as significantly changed by surgery (500 genes, top) or sex (14 genes, bottom) were analyzed using Ingenuity Pathway Analysis (ingenuity.com). Twenty-three networks were identified from the surgery group and 6 networks were identified from the sex group. The top functions in each group are identified as well as the score (a rank ordering value, calculated by the IPA software) and number of molecules identified in the group. Commonalities in functions amongst the groups are color coded: blue for cell cycle/proliferation, red for inflammation, pink for metabolism, green for connective tissue disorders, orange for genetic disorder, and purple for cardiovascular disease.

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