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. Author manuscript; available in PMC: 2010 Oct 18.
Published in final edited form as: Gastroenterology. 2008 Jun 3;135(3):830–84010. doi: 10.1053/j.gastro.2008.05.080
Parental Allele test MAF-Parents MAF-Parents GC test
SNP rank physical position type Closest gene Distance to gene Chi-Sq p-value LCI UCI Rejectors Non-Rejectors P-VALUE
rs2975033 4 29930240 INTERGENIC HLA-G 23348 0.08 −0.01 0.21 30.95 21.05 0.075
rs12206499 10 30045106 INTERGENIC HCG9 −5765 0.22 −0.04 0.19 31.75 24.34 0.0126
rs3823355 11 30050062 UPSTREAM HCG9 −809 0.19 −0.04 0.19 32.03 24.34 0.026
rs6904029 12 30051046 NON_SYNONYMOUS_CODING HCG9 0 0.22 −0.04 0.19 31.75 24.34 0.026
rs2394255 2 30057800 DOWNSTREAM HCG9 3625 0.42 −0.07 0.18 47.62 42.11 0.004
rs3869070 6 30131847 INTRONIC Q6ZU40_HUMAN 0 0.46 −0.07 0.18 45.16 40.00 0.014
rs9366752 1 30132656 3PRIME_UTR C6orf12 0 0.42 −0.06 0.16 26.98 22.08 0.006
rs6909253 15 30163622 INTERGENIC RNF39 12015 0.16 −0.03 0.21 45.24 36.18 0.041
rs9261394 16 30172541 INTERGENIC TRIM31 −6114 0.19 −0.04 0.21 45.97 37.33 0.039
rs2523990 13 30185208 INTRONIC TRIM31 0 0.10 −0.02 0.23 54.10 43.33 0.076
rs1345229 18 30290374 UPSTREAM TRIM26 1191 0.01 0.02 0.18 14.52 4.61 0.35
rs9357097 7 30393100 INTERGENIC TRIM39 −9500 0.00 −0.29 −0.08 14.17 32.89 0.734
rs1264583 19 30401462 UPSTREAM TRIM39 −1138 0.26 −0.03 0.11 8.73 4.67 0.138
rs1264581 5 30405484 SYNONYMOUS_CODING TRIM39 0 0.25 −0.03 0.11 9.68 5.33 0.0959
rs3095150 17 31040511 INTERGENIC DPCR1 10534 0.35 −0.06 0.18 39.52 33.33 0.008
rs6457699 3 33089625 UPSTREAM HLA-DOA 4258 0.06 0.00 0.25 52.42 40.13 0.045
rs9276994 8 33092233 INTERGENIC HLA-DOA 6866 0.08 −0.01 0.23 44.44 33.33 0.063
rs6933994 14 33095098 INTERGENIC HLA-DOA 9731 0.12 −0.02 0.23 55.56 45.27 0.074
rs9296068 9 33096673 INTERGENIC HLA-DOA 11306 0.40 −0.07 0.18 40.32 34.67 0.004