Table 3.
Number of transmitted (T) or non-transmitted (NT) minor alleles in 326 CL/P trios
No. | SNP name | Paternal |
Maternal |
Maternal genotypic effect |
|||||||
---|---|---|---|---|---|---|---|---|---|---|---|
TAT |
TAT |
||||||||||
T | NT | P value | ORa | T | NT | P value | ORa | Z | P value | ||
1 | rs12083685 | 29 | 45 | 0.629 | 0.64 | 31 | 48 | 0.056 | 0.65 | 0.446 | 0.70 |
2 | rs12081405 | 29 | 44 | 0.079 | 0.66 | 31 | 48 | 0.056 | 0.65 | −0.507 | 0.65 |
3 | rs2076153 | 41 | 39 | 0.823 | 1.05 | 39 | 33 | 0.480 | 1.18 | 0.056 | 1.00 |
4 | rs1044516 | 44 | 32 | 0.169 | 1.38 | 53 | 31 | 0.016 | 1.71 | −0.162 | 0.91 |
5 | rs599021 | 46 | 36 | 0.269 | 1.28 | 47 | 36 | 0.227 | 1.31 | 0.475 | 0.69 |
6 | rs17317411 | 8 | 16 | 0.102 | 0.50 | 13 | 10 | 0.532 | 1.30 | −0.144 | 1.00 |
7 | rs2073485 | 35 | 50 | 0.104 | 0.70 | 27 | 53 | 0.004 | 0.51 | −0.054 | 1.00 |
8 | rs2235373 | 35 | 50 | 0.104 | 0.70 | 27 | 53 | 0.004 | 0.51 | −0.054 | 1.00 |
9 | rs674433 | 44 | 24 | 0.153 | 1.83 | 32 | 30 | 0.800 | 1.07 | −0.658 | 0.56 |
10 | rs595918 | 44 | 24 | 0.153 | 1.83 | 32 | 30 | 0.800 | 1.07 | 0.658 | 0.56 |
11 | rs17015218 | 15 | 21 | 0.317 | 0.71 | 21 | 16 | 0.411 | 1.31 | 0.553 | 0.66 |
12 | rs2013162 | 35 | 46 | 0.222 | 0.76 | 33 | 40 | 0.413 | 0.83 | −0.107 | 0.96 |
13 | rs7552506 | 30 | 37 | 0.392 | 0.81 | 33 | 27 | 0.439 | 1.22 | 0.400 | 0.75 |
14 | rs2236907 | 35 | 46 | 0.222 | 0.76 | 33 | 40 | 0.413 | 0.83 | −0.107 | 0.96 |
15 | rs2294408 | 35 | 46 | 0.222 | 0.76 | 33 | 40 | 0.413 | 0.83 | −0.107 | 0.96 |
16 | rs861019 | 45 | 36 | 0.317 | 1.25 | 47 | 36 | 0.227 | 1.31 | 0.536 | 0.64 |
17 | rs2073487 | 35 | 47 | 0.185 | 0.74 | 32 | 40 | 0.346 | 0.80 | 0.000 | 1.00 |
18 | rs3753517 | 26 | 48 | 0.011 | 0.54 | 30 | 54 | 0.009 | 0.56 | 0.230 | 0.87 |
19 | rs1005287 | 48 | 34 | 0.122 | 1.41 | 32 | 40 | 0.346 | 0.80 | 0.000 | 1.00 |
20 | rs17389541 | 20 | 27 | 0.307 | 0.74 | 23 | 24 | 0.884 | 0.96 | 0.193 | 0.93 |
21 | rs642961 | 44 | 23 | 0.010 | 1.91 | 32 | 30 | 0.799 | 1.07 | 0.593 | 0.60 |
OR (transmission) odds ratio of transmission of minor allele