Table 2.
De novo insertion sites of Dart-related TEs identified by transposons-display (TD) (designated as Dart-TDI) in the rice-Zizania introgressants
| Insertion sites | Position of insertion sites | Locus-specific primers (5'-3') | Inserted into | TIR (5'-3') | TSD (5'-3') |
|---|---|---|---|---|---|
| Dart-TDI-1 | Chr.3; position: 2726981; non-coding |
For: tcacgcagtagatgccaaag Rev: gcacgtctccgtagctctct |
RZ2 | gcccatttggccacctcta | tgctagta |
| Dart-TDI-3 | Chr.10; position:4241777; OSJNAb0015J03.2 exon |
For: gtagagggctcaatcgtgga Rev: ctaaggtctcgaggcacacc |
RZ1, RZ2 |
gcccatttggccacctcta | gcatgaag |
| Dart-TDI-4 | Chr.5; position: 29238540; non-coding |
For: gcccgtttggccacctctat Rev: tgtaaaatgaccagcgacga |
RZ1, RZ2, RZ35 |
gcccatttggccacctcta | tgtggttg |
| Dart-TDI-5 | Chr.5; position:14917879; non-coding |
For: tacggttcccattgttttcc Rev: gggtgtgcacgatgttgtaa |
RZ2 | gcccatttggccacctcta | tacaatgt |
| Dart-TDI-7 | Chr.12; position:12726861; non-coding |
For: ttgttgttagttttgcgtgtaga Rev: gaaagcaggttggagaggtta |
RZ1, RZ2 |
gcccatttggccacctcta | cgctagta |
| Dart-TDI-8 | Chr.3; position:27833204; Os03g0699200 exon |
For: taattaagttggaagtgggaca Rev: tttctgtaagattacaaccagaggt |
RZ1, RZ2, RZ35 |
gcccatttggccacctcta | tggagtat |
| Dart-TDI-10 | Chr.3; position:17730615; non-coding |
For: ctttcgtaggcgaaaagtgc Rev: ctgcaaccacctgtctctga |
RZ2 | gcccatttggccacctcta | cgaagaac |
| Dart-TDI-11 | Chr.4; position:638561; non-coding |
For: catgaattgggtgccatgta Rev: ccccatagggtaggcaaaat |
RZ1, RZ2, RZ35 |
gcccatttggccacctcta | tctgaatt |
| Dart-TDI-16 | Chr.5; position:10010289; non-coding |
For: gcccgtttggccacctctat Rev: ggtggaggacctgctcaata |
RZ1, RZ2 |
gcccatttggccacctcta | ttcgacat |
| Dart-TDI-18 | Chr.12; position:6156546; non-coding |
For: tgagcacgcctagctcagta Rev: atgcacggcaactttctctt |
RZ1, RZ2 |
gcccatttggccacctcta | cctctcaa |
| Dart-TDI-19 | Chr.12; position:6345593; non-coding |
For: gcccgtttggccacctctac Rev: acaaatggcctcctgtgttc |
RZ1 | gcccatttggccacctcta | caagcagc |
| Dart-TDI-20 | Chr.12; position:21951729; non-coding |
For: tccagccaaaccctgttc Rev: gctcgccagatgtcaggt |
RZ1 | gcccatttggccacctcta | cgtcggga |
| Dart-TDI-21 | Chr.1; position:19308190; non-coding |
For: tgctacagtagaagggcgtgta Rev: atgcacatctggtcttttgatg |
RZ2 | gcccatttggccacctcta | cacacgta |
| Dart-TDI-22 | Chr.2; position:6211564; non-coding |
For: ggatccgtttggatcagaga Rev: tgcagcagctgattcatacc |
RZ2 | gcccatttggccacctcta | ccaatatt |
| Dart-TDI-24 | Chr.5; position:10749306; OSJNBa0037H03.12 intro |
For: gagctgctcctgaaaaccac Rev: gaattttccttgccgtgtgt |
RZ1, RZ2 |
gcccatttggccacctcta | tcatgttt |
| Dart-TDI-25 | Chr.1; position:25299; non-coding |
For: gtgccggagaatgatttgat Rev: atttccctcgatgcactgtc |
RZ1, RZ2 |
gcccatttggccacctcta | tacgcagc |
| Dart-TDI-26 | Chr.2; position:10207338; Os02g0277600 intro |
For: gcccatttggccacctcta Rev: cgaatgagtgtccttgatcg |
RZ1, RZ2 |
gcccatttggccacctcta | agcaaaac |
| Dart-TDI-27 | Chr.12; position:23594158; Os12g0572000 3'UTR |
For: gcccgtttggccacctctac Rev: agcaacccacagaacagctt |
RZ35 | gcccatttggccacctcta | ccaccctc |
| Dart-TDI-28 | Chr.8; position:23713525; non-coding |
For: gcccgtttggccacctctac Rev: tctgcggttgaaacaatgag |
RZ2 | gcccatttggccacctcta | cggctaac |
| Dart-TDI-29 | Chr.7; position:20028374; non-coding |
For: gcccgtttggccacctctat Rev: aaagtcaatggaaaggggaaa |
RZ1, RZ2 |
gcccatttggccacctcta | tcaaaatc |
| Dart-TDI-30 | Chr.4; position:25704503; Os04g0514800 exon |
For: gcccatttggccacctcta Rev: ggcaatgcggttggtttc |
RZ1, RZ2 |
gcccatttggccacctcta | cgctattc |