Table 1.
Sets of genes found to be differentially expressed in edm2 or wnk8 mutants by microarray experiments
| # | gene set name* | Definition** | number of genes*** |
|---|---|---|---|
| 1 | EDM2-induced | Col-0 >edm2-2 | 116 |
| 2 | EDM2-suppressed | edm2-2 > Col-0 | 106 |
| 3 | Core EDM2-induced | Col-0 >edm2-2 AND pXVE:HA-EDM2-a > edm2-2 |
9 |
| 4 | core EDM2-suppressed |
edm2-2 > Col-0 AND edm2-2 >pXVE:HA-EDM2-a |
37 |
| 5 | WNK8-induced | Col-0 >wnk8-1 AND Col-0 >wnk8-2 AND Col-0 >wnk8-3 |
302 |
| 6 | WNK8-suppressed |
wnk8-1 > Col-0 AND wnk8-2 > Col-0 AND wnk8-3 > Col-0 |
88 |
| 7 | EDM2 &WNK8-induced | set1 AND set 5 | 66 |
| 8 | EDM2 &WNK8-suppressed | set2 AND set 6 | 15 |
| 9 | only EDM2-induced | set1 NOT set5 | 50 |
| 10 | only EDM2-suppressed | set2 NOT set 6 | 91 |
| 11 | only WNK8-induced | set5 NOT set1 | 236 |
| 12 | only WNK8-suppressed | set6 NOT set 2 | 73 |
*: refers to the effect of wild type EDM2 or WNK8 on expression of the respective gene set
**: refers to transcript levels of individual genes in the indicated genotypes or presence of genes in defined gene sets: "AND" and "NOT" are used according to Boolean logic.
***: the AGI numbers of these genes and their signal intensities are provided in Additional Files 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 and 12 (Tables S1 - S12).