Table 2.
Overrepresented GO attributes in sets of differentially expressed genes
| Gene set* | GO term (and category)** |
p-value | Genes*** |
|---|---|---|---|
| set 7 "EDM2 &WNK8-induced" | metabolic process (BF) | 3.08 e-05 |
INOSITOL(1,4,5)P3 5-PHOSPHATASE II, CKX4, XTH18, CYP86A4, CH1, AT5G42250, AT5G25930, GPAT3, MBF1C, CRK10, AKN2, ATCAD4, JAR1, SHM7, AT5G45650, CYP81F2, WRKY40, ATGA2OX2, AT2G05940, OPR3, AT5G37540, ATHSP101, BMY3, SCL13, GSTU12, APS3, PUB23, AT3G04010, NUDT7, AT2G32150, ATGSTU5, XTR6, AT1G70740, CRK42, GPAT2, RBOHD, AT1G11050, KCS9, ACA1, SZF1 |
| response to stimulus (BF) | 3.01 e-04 |
INOSITOL(1,4,5)P3 5-PHOSPHATASE II, WRR4, AT4G34150, MBF1C, AT1G59860, JAR1, SHM7, CYP81F2, WRKY40, ATGA2OX2, OPR3, ATHSFA2, ATHSP101, SCL13, CAD1, PUB23, NUDT7, ATGSTU5, TCH4, AT3G09440, RBOHD, KCS9, SZF1 | |
| response to temperature stimulus (BF) | 9.73 e-04 |
AT4G34150, MBF1C, AT1G59860, ATHSFA2, ATHSP101, TCH4, RBOHD, KCS9 | |
| response to stress (BF) | 2.10 e-03 |
WRR4, AT4G34150, MBF1C, AT1G59860, JAR1, CYP81F2, WRKY40, OPR3, ATHSFA2, ATHSP101, PUB23, NUDT7, ATGSTU5, TCH4, RBOHD, KCS9 | |
| response to chemical stimulus (BF) | 3.98 e-03 |
INOSITOL(1,4,5)P3, 5-PHOSPHATASE, II, MBF1C, JAR1, SHM7, WRKY40, OPR3, ATHSFA2, ATHSP101, SCL13, PUB23, NUDT7, ATGSTU5, TCH4, AT3G09440, SZF1 | |
| cellular metabolic process (BF) | 5.01 e-03 |
INOSITOL(1,4,5)P3 5-PHOSPHATASE II, CKX4, XTH18, CYP86A4, CH1, AT5G25930, MBF1C, CRK10, AKN2, ATCAD4, JAR1, SHM7, CYP81F2, WRKY40, ATGA2OX2, AT2G05940, OPR3, ATHSP101, SCL13, GSTU12, APS3, PUB23, NUDT7, ATGSTU5, XTR6, AT1G70740, CRK42, RBOHD, AT1G11050, KCS9, ACA1, SZF1 | |
| response to abiotic stimulus (BF) | 7.64 e-03 |
AT4G34150, MBF1C, AT1G59860, JAR1, ATGA2OX2, ATHSFA2, ATHSP101, PUB23, NUDT7, TCH4, RBOHD, KCS9 | |
| catalytic activity (MF) | 3.57 e-09 |
INOSITOL(1,4,5)P3 5-PHOSPHATASE II, CKX4, XTH18, CYP86A4, CH1, WRR4, AT5G42250, AT4G24160, GPAT3, CRK10, AKN2, ATCAD4, AT1G72520, JAR1, SHM7, AT5G45650, AT5G65140.2, CYP81F2, ATGA2OX2, AT2G05940, OPR3, AT5G37540, ATHSP101, AT1G21120, BMY3, AT5G39580, GSTU12, APS3, PUB23, AT3G04010, SUB, NUDT7, AT2G32150, ATGSTU5, XTR6, TCH4, AT1G70740, AT1G73600, CRK42, GPAT2, RBOHD, KCS9, ACA1 | |
| transferase activity (MF) | 7.87 e-05 |
XTH18, AT4G24160, GPAT3, CRK10, AKN2, JAR1, SHM7, AT2G05940, AT1G21120.1, GSTU12, APS3, SUB, ATGSTU5, XTR6, TCH4, AT1G70740.1, AT1G73600, CRK42, GPAT2, KCS9 | |
| set 9 "only EDM2-induced" |
catalytic activity (MF) | 2.60e-06 | AT5G39080, AT3G63510, AAE14, PSD2, AT1G22430, SAL1, ATALN, AT5G09300, AT4G31390, AT2G25870, SRS, FC2, AT2G47880, AtCXE17, CSLA11, PKp3, UGT80B1, MCM4, ADC1, AT5G61480, AT2G26870 AT4G33920, CYP78A8, B120, XCP1, ATPREP2, CYP79B2, AT2G04845, AT5G24670, PAL4, CINV2, AT5G38710 |
| set 10 "only EDM2-suppressed" |
response to biotic stimulus (BF) | 1.84 e-03 |
PCC1, ATCNGC11, ATEBP, FER1, AZI1, PR4, ACD6, pEARLI, 1, PR5, LURP1, MLP34 |
| response to other organism (BF) | 8.71 e-03 |
PCC1, ATCNGC11, ATEBP, FER1, AZI1, PR4, ACD6, pEARLI, 1, PR5, LURP1 | |
| set 11 "only WNK8-induced" |
Response to stimulus (BF) | 6.23 e-15 |
AT3G42570, GPT2, TIL, STO, CBP60G, BAM1, AT1G51090, AT3G61220, HSP17.6II, OPR2, WRKY18, LOX3, AT2G29500, VTC4, ERD10, AT3G53990, MYB77, CRK11, TCH3, AT1G03220.1, PIL6, CIPK20, WRKY25, WRKY33, BT5, ZAR1, AT3G04210.1, ATHSP90.1, MEK1, ATHB-12, AT5G50915, HSP70, MYBR1, EXO, HSP17.4, LZF1, ATCAMBP25, CMPG1, PHT4;1, AT-HSP17.6A, ATPAP1, ATACA2, SYP122, PAPP2C, LHCB2.3, SOUL-1, TCH2, NHL2, CPK32, CYP707A3, ARR6, SFP1, RAV1, DIN11, AT4G28140, UTR1, LEA14, AT1G55450.1, CEJ1, ATGSTU26, AT1G54050, JAZ6, TIR, NIR1, ADR1, NHL3, AT5G51440, SYP121, TMAC2, CML38, AT5G51190, AT5G54170, ATGSTF8, AT1G19020, ADOF1, CAM9 |
| response to stress (BF) | 1.26 e-13 |
AT3G42570, TIL, STO, CBP60G, BAM1, AT1G51090, AT3G61220, HSP17.6II, OPR2, WRKY18, LOX3, AT2G29500, VTC4, ERD10, AT3G53990, CRK11, AT1G03220, WRKY25, WRKY33, ZAR1, AT3G04210, ATHSP90.1, MEK1, ATHB-12, HSP70, MYBR1, HSP17.4, ATCAMBP25, AT-HSP17.6A, ATPAP1, SYP122, TCH2, NHL2, CPK32, CYP707A3, DIN11, UTR1, LEA14, AT1G55450, CEJ1, ATGSTU26, AT1G54050, JAZ6, TIR, ADR1, NHL3, AT5G51440, SYP121, TMAC2, CML38, AT5G54170, ATGSTF8, AT1G19020, CAM9 | |
| response to abiotic stimulus (BF) | 2.47 e-10 |
TIL, STO, BAM1, HSP17.6II, AT2G29500, VTC4, ERD10, AT3G53990, TCH3, AT1G03220.1, PIL6, WRKY25, WRKY33, ATHSP90.1, MEK1, ATHB-12, HSP70, MYBR1, HSP17.4, LZF1, ATCAMBP25, AT-HSP17.6A, PAPP2C, LHCB2.3, SOUL-1, TCH2, CPK32, CYP707A3, LEA14, AT1G55450.1, CEJ1, ATGSTU26, AT1G54050, ADR1, AT5G51440, TMAC2, ATGSTF8, CAM9 | |
| response to chemical stimulus (BF) | 1.05 e-08 |
AT3G42570, GPT2, CBP60G, BAM1, WRKY18, AT2G29500, ERD10, MYB77, CRK11, CIPK20, WRKY33, BT5, ATHSP90.1, MEK1, ATHB-12, AT5G50915, HSP70, MYBR1, EXO, ATCAMBP25, CMPG1, AT-HSP17.6A, ATACA2, SYP122, TCH2, CPK32, CYP707A3, ARR6, RAV1, AT4G28140, UTR1, LEA14, CEJ1, ATGSTU26, AT1G54050, JAZ6, NIR1, ADR1, SYP121, TMAC2, AT5G51190, AT1G19020, ADOF1, CAM9 | |
| response to organic substance (BF) | 5.50 e-05 |
GPT2, CBP60G, WRKY18, ERD10, MYB77, CIPK20, WRKY33, BT5, MEK1, ATHB-12, AT5G50915, MYBR1, EXO, CMPG1, SYP122, TCH2, CPK32, ARR6, RAV1, AT4G28140, UTR1, CEJ1, JAZ6, SYP121, TMAC2, AT5G51190, ADOF1, CAM9 | |
| plasma membrane (CC) | 4.65 e-03 |
sks3, GPT2, TIL, AT2G41410, PUP1, AT5G15350, VTC4, TCH3, AtRABA1c, ATHSP90.1, AT1G42470, HSP70, SEC22, AT4G27720, LHCB2.2, ATPAP1, SYP122, PAPP2C, SOUL-1, TCH2, CPK32, SLAH3, AT4G13010.1, AT1G52290.1, TET8, ATPUP18, NHL3, SYP121, CML38, ATGSTF8 | |
*: Gene sets 7 - 12, as defined in table 1 were examined for overrepresented GO attributes using AmiGO. **: GO terms belonging to either of the three GO categories "Biological Function" (BF), "Molecular Function" (MF) or "Cellular Compartment" (CC) are listed. ***: If available common gene names are listed; otherwise AGI gene IDs are given.