Table 1.
ORF | Primer name | Primer sequence (5′ to 3′) | Amplicon sizea | qPCR standard curve resultsb |
||
---|---|---|---|---|---|---|
R2 | slope | PCR % efficiency | ||||
1 | MdvO1F1714 qMdvO1R1882 |
ATTTCCGCCACACCATACAT ATTGTTGGGCATCGAGTTGT |
169 bp (1714–1882) | 0.999 | −3.309 | 100.6 |
10 | MdvO10F133 qMdvO10R7964 |
CGCAATTGTTCCATGTATCG GAAGGAGGGCGGTATGGTA |
165 bp (8128–7964) | 1.000 | −3.299 | 101.0 |
47 | SGHVenvF1 qSGHVenvR1 |
ACCTACGGTCTGGATATTCGTG ATAAAGACCCATGCCTGTGC |
149 bp (49471–49619) | 0.999 | −3.242 | 103.4 |
86 | qMdvO88(86)F94757 MdvO88(86)R767 |
TGCCATCAAGTGTCTGGAAG ACAAAAATCTGTCGGGCATC |
180 bp (94757–94936) | 0.998 | −3.187 | 106.0 |
106 | MdvO108(106)F110 qMdvO108(106)R119549 |
CGGCAGCAACCTTATTCATT ACGACGACATCATTTGACGA |
130 bp (119420–119549) | 0.999 | −3.275 | 102.0 |
Reference | Mdv28sFDQ656974 qMdv28sRDQ656974 |
GTTAAGCCCGATGAACCTGA TTGAATAAACTTTCGCCATCG |
158 bp | N/A | N/A | N/A |
Numbers in parentheses indicate the position of the amplicon in the MdSGHV genome.
N/A = not applicable.