Table 4.
Classification of metabolic genes according to metabolic pathways
| Amino acid metabolism | |||
| tnfn1_pw060323p08q120 | FTN_0020 | carB | carbamoyl-phosphate synthase large chain |
| tnfn1_pw060328p06q174 | FTN_0125 | ackA | propionate kinase 2/acetate kinase A |
| tnfn1_pw060323p05q182 | FTN_0504 | lysine decarboxylase | |
| tnfn1_pw060510p01q124 | FTN_0507 | gcvP1 | glycine cleavage system P protein, subunit 1 |
| tnfn1_pw060510p02q154 | FTN_0511 | shikimate 5-dehydrogenase | |
| tnfn1_pw060510p02q157 | FTN_0511 | shikimate 5-dehydrogenase | |
| tnfn1_pw060510p04q157 | FTN_0511 | shikimate 5-dehydrogenase | |
| tnfn1_pw060510p04q157 | FTN_0511 | shikimate 5-dehydrogenase | |
| tnfn1_pw060323p06q194 | FTN_0527 | thrC | threonine synthase |
| tnfn1_pw060510p01q172 | FTN_0527 | thrC | threonine synthase |
| tnfn1_pw060510p03q172 | FTN_0527 | thrC | threonine synthase |
| tnfn1_pw060510p03q171 | FTN_0588 | asparaginase | |
| tnfn1_pw060328p04q196 | FTN_0746 | alr | alanine racemase |
| tnfn1_pw060328p06q142 | FTN_0954 | histidine acid phosphatase | |
| tnfn1_pw060328p02q175 | FTN_1131 | putA | bifunctional proline dehydrogenase, pyrroline-5-carboxylate dehydrogenase |
| tnfn1_pw060328p04q116 | FTN_9765 | choloylglycine hydrolase family protein | |
| tnfn1_pw060510p04q185 | FTN_1701 | glutamate decarboxylase | |
| Carbohydrate metabolism | |||
| tnfn1_pw060420p01q123 | FTN_0524 | asd | aspartate semialdehyde dehydrogenase |
| tnfn1_pw060419p03q116 | FTN_0593 | sucD | succinyl-CoA synthetase, alpha subunit |
| tnfn1_pw060328p02q139 | FTN_0621 | eno | enolase (2-phosphoglycerate dehydratase) |
| tnfn1_pw060510p02q187 | FTN_1018 | aldolase/adducin class II family protein | |
| tnfn1_pw060328p03q107 | FTN_1222 | kpsF | phosphosugar isomerase |
| tnfn1_pw060328p06q150 | FTN_1494 | aceE | pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase |
| tnfn1_pw060420p04q105 | FTN_1584 | glpD | glycerol-3-phosphate dehydrogenase |
| tnfn1_pw060419p04q130 | FTN_1585 | glpK | glycerol kinase |
| tnfn1_pw060419p02q112 | FTN_1619 | appC | cytochrome bd-II terminal oxidase subunit I |
| tnfn1_pw060328p02q105 | FTN_1620 | appB | cytochrome bd-II terminal oxidase subunit II |
| tnfn1_pw060510p04q136 | FTN_1767 | rbsK | ribokinase, pfkB family |
| Nucleotide metabolism | |||
| tnfn1_pw060323p08q120 | FTN_0020 | carB | carbamoyl-phosphate synthase large chain |
| tnfn1_pw060510p02q160 | FTN_0021 | carA | carbamoyl-phosphate synthase small chain |
| tnfn1_pw060418p03q133 | FTN_0199 | cyoE | heme O synthase |
| tnfn1_pw060323p06q113 | FTN_0420 | SAICAR synthetase/phosphoribosylamine-glycine ligase | |
| tnfn1_pw060510p01q159 | FTN_0695 | add | deoxyadenosine deaminase/adenosine deaminase |
| tnfn1_pw060328p01q151 | FTN_0983 | bifunctional protein: glutaredoxin 3/ribonucleotide reductase beta subunit | |
| tnfn1_pw060419p04q135 | FTN_1415 | thioredoxin | |
| tnfn1_pw060419p04q181 | FTN_1415 | thioredoxin | |
| tnfn1_pw060420p04q116 | FTN_1421 | wbtH | glutamine amidotransferase/asparagine synthase |
| tnfn1_pw060510p01q118 | FTN_1553 | nudH | dGTP pyrophosphohydrolase |
| tnfn1_pw060323p04q160 | FTN_1655 | rluC | ribosomal large subunit pseudouridine synthase C |
| tnfn1_pw060510p02q165 | FTN_1655 | rluC | ribosomal large subunit pseudouridine synthase C |
| Reductive Metabolism | |||
| tnfn1_pw060419p03q169 | FTN_0218 | nfnB | dihydropteridine reductase |
| tnfn1_pw060418p02q128 | FTN_0633 | katG | peroxidase/catalase |
| tnfn1_pw060328p01q128 | FTN_0840 | mdaB | NADPH-quinone reductase (modulator of drug activity B) |
| tnfn1_pw060420p03q153 | FTN_0840 | mdaB | NADPH-quinone reductase (modulator of drug activity B) |
| tnfn1_pw060420p04q194 | FTN_1231 | gloA | lactoylglutathione lyase |
| tnfn1_pw060510p02q164 | FTN_1231 | gloA | lactoylglutathione lyase |
| tnfn1_pw060510p04q146 | FTN_1231 | gloA | lactoylglutathione lyase |
| tnfn1_pw060418p01q131 | FTN_1557 | oxidoreductase iron/ascorbate family protein | |
| tnfn1_pw060418p04q111 | FTN_1621 | predicted NAD/FAD-dependent oxidoreductase | |
| tnfn1_pw060418p04q112 | FTN_1621 | predicted NAD/FAD-dependent oxidoreductase | |
| tnfn1_pw060420p04q169 | FTN_1621 | predicted NAD/FAD-dependent oxidoreductase | |
| Lipid Metabolism | |||
| tnfn1_pw060420p02q175 | FTN_0877 | cls | cardiolipin synthetase |
| tnfn1_pw060420p04q140 | FTN_0957 | short chain dehydrogenase | |
| conenzyme synthesis | |||
| tnfn1_pw060328p06q130 | FTN_0692 | nadA | quinolinate sythetase A |
| tnfn1_pw060419p04q164 | FTN_0692 | nadA | quinolinate sythetase A |
| tnfn1_pw060328p06q156 | FTN_0811 | birA | biotin--acetyl-CoA-carboxylase ligase |
| tnfn1_pw060418p01q124 | FTN_1245 | iscS | cysteine desulfurase |
| tnfn1_pw060419p03q126 | FTN_1278 | nadE | NAD synthase |
| tnfn1_pw060323p04q110 | FTN_1678 | nuoC | NADH dehydrogenase I, C subunit |
| tnfn1_pw060419p01q106 | FTN_0111 | ribH | riboflavin synthase beta-chain |
| tnfn1_pw060420p02q191 | FTN_0113 | ribC | riboflavin synthase alpha chain |
| Peptidoglycan biosynthesis | |||
| tnfn1_pw060323p04q102 | FTN_0211 | pcp | pyrrolidone carboxylylate peptidase |
| tnfn1_pw060418p03q177 | FTN_0211 | pcp | pyrrolidone carboxylylate peptidase |
| Aromatic compound biosynthesis | |||
| tnfn1_pw060420p04q108 | FTN_0822 | para-aminobenzoate synthase component I | |
| tnfn1_pw060323p08q141 | FTN_1015 | isochorismatase family protein | |
| tnfn1_pw060420p01q129 | FTN_1015 | isochorismatase family protein | |
| tnfn1_pw060328p02q174 | FTN_1135 | aroB | 3-dehydroquinate synthetase |
| ppGpp biosynthesis | |||
| tnfn1_pw060323p06q110 | FTN_1518 | relA | GDP pyrophosphokinase/GTP pyrophosphokinase |
| tnfn1_pw060323p07q167 | FTN_1518 | relA | GDP pyrophosphokinase/GTP pyrophosphokinase |