Table 1.
Local motifs over represented in the immune set.
| Motif | Ratio | Immune/Non | Motif | Ratio | Immune/Non | Motif | Ratio | Immune/Non |
|---|---|---|---|---|---|---|---|---|
| GSPGP | 1.58 | 9.5/6.0 | PGPGL | -- | 15.0/0.0 | APAAA | -- | 20.3/0.0 |
| EDEEE | 1.4 | 42.3/30.2 | DEEEE | 1.8 | 59.3/33.0 | RGRGR | 2.78 | 109.8/39.4 |
| AAEAP | -- | 17.7/0.0 | PGQPG | -- | 19.0/0.0 | EEAEE | -- | 17.8/0.0 |
| PPLPP | 1.3 | 16.0/12.3 | PGGPG | -- | 17.6/0.0 | PPPLP | 1.29 | 15.2/11.8 |
| AAAEA | -- | 22.8/0.0 | EDEED | 1.7 | 56.4/33.2 | PGPGG | 1.65 | 14.6/8.9 |
| PPPPL | 1.35 | 15.2/11.2 | EEEGE | 1.7 | 18.5/10.8 | SSASS | 2.16 | 7.1/3.3 |
| GSGSG | 2.16 | 17.5/8.1 | PAAPP | 1.88 | 12.3/6.5 | KKKKK | 1.68 | 184.1/109.7 |
| QPPPP | 1.26 | 19.2/15.2 | EEDEE | 2.33 | 48.0/20.6 | EEEDD | 1.56 | 51.7/33.2 |
| EEGEE | -- | 18.5/0.0 | PAPAP | 1.47 | 14.3/9.8 | TTTTT | -- | 176.8/0.0 |
| EAPAA | -- | 19.3/0.0 | PGLPG | 1.55 | 19.5/12.5 | PPVPP | 1.58 | 18.4/11.7 |
| APAPA | 1.6 | 13.2/8.2 | SGSGS | -- | 11.3/0.0 | QQQQP | 1.29 | 71.7/55.4 |
| GPGGP | -- | 19.0/0.0 | EPEPE | -- | 15.8/0.0 | PPPPQ | 1.32 | 18.2/13.8 |
| PPPPA | 2.05 | 22.3/10.9 | QQQQQ | 1.34 | 1239.8/926.7 | PAPQV | -- | 31.5/0.0 |
| LPPPP | 1.4 | 20.2/14.4 | SSTSS | 1.37 | 8.2/6.0 | PQPPP | 1.47 | 13.9/9.4 |
| EEEEE | 1.28 | 211.9/165.8 | PLPPP | 1.39 | 12.6/9.1 | PPAPP | 1.26 | 11.1/8.8 |
| SSCSS | -- | 31.3/0.0 | AEAPA | -- | 25.7/0.0 | EEEED | 1.91 | 73.4/38.5 |
| PEPEP | -- | 14.8/0.0 | EEEEV | 1.53 | 34.9/22.9 | DDEEE | -- | 56.4/0.0 |
| QQPPP | 1.65 | 29.5/17.9 | GRGRG | 2.65 | 84.4/31.9 | QQQPP | 1.31 | 38.3/29.2 |
| EEEDE | 1.27 | 36.7/28.9 | KGEKG | -- | 38.1/0.0 | GEEEE | 1.68 | 25.9/15.3 |
| GPPPP | 1.45 | 12.4/8.5 | PAAAE | -- | 19.3/0.0 |
The criterion for including motifs in the table was that the ratio of observed over expected was higher in the immune set than in the non-immune set by a factor of at least 1.25.