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. 2010 Oct 15;11(Suppl 7):S9. doi: 10.1186/1471-2105-11-S7-S9

Table 1.

Summary of SCL annotation in UniProtKB.

Items Description No. of Protein Sequences Dataset Size %
A Proteins with SCL annotation in UniProt database 274730 494762 55.52
B Proteins in A with experimentally known SCL 55079 494762 11.13
C Proteins in A with uncertain terms such as potential/probable/similarity 219651 494762 44.39
D Proteins with GO annotation 461365 494762 93.24
E Protein with SCL annotation in GO database 337762 494762 68.26
F UniProt human entries with experimentally known SCL 6923 20274 34.14
G UniProt human entries with uncertain terms such as potential/probable/similarity 7486 20274 36.92

Distribution of 494762 protein entries from UniProtKB/Swiss-Prot* database (version 57.9) according to their SCL annotation and GO database reference.

* The original number of UniProt protein entries was 510076. Of these, 15314 were annotated as "fragment" or contained less than 50 amino acids residues, hence, were removed from further consideration, i.e. 494762. Similarly, we considered only 20274 human protein entries out of 20334 sequences.