Table 1. Class E VPS factors and associated proteins encoding ubiquitin binding domains.
Protein | Domain type | Kd | Methods | References |
Tsg101 | UEV | ∼500µM | SPR, NMR, structure | [7], [34], [59], [60] |
Hrs | DUIM, VHS | ∼300µM, ∼1.4mM | IP, SPR, structure | [34], [35], [36], [61], [62], [63] |
STAM | UIM, VHS, | ∼430µM, ∼220µM | IP, NMR, Y2H | [33], [64], [65], [66], this study |
Eap45 | GLUE | ∼300µM | IP, SPR, structure | [37], [67], [68] |
Eps15 | UIM | ∼0.36µM | IP, SPR | [35], [36] |
ALIX | Unknown | IP, Y2H | [48], this study | |
CIN85 | SH3 | IP | [69] |
SPR: surface plasmon resonance; NMR: nuclear magnetic resonance; IP: immunoprecipitation or bead based ‘pull-down’ assays; Y2H: yeast 2-hybrid.