Table 3.
Gene expression comparison of normal epithelium versus tumor cells, and normal stroma versus tumor stroma
| Case | Sample | Detector | Avg.Ct | St. Dev | ΔCtN | Sample | Av.Ct | St. dev | ΔCtT | ΔΔCt | 2^-ΔΔCt |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 |
NE |
MMP3 |
39.59 |
17.86 |
TE |
25.50 |
0.108 |
5.37 |
-12.48 |
↑ |
|
| NE |
MMP10 |
38.59 |
3.43 |
16.85 |
TE |
21.39 |
0.07 |
1.25 |
-15.59 |
↑ |
|
| NE |
ACTB |
21.73 |
0.22 |
TE |
20.13 |
0.03 |
|||||
| NS |
MMP3 |
36.20 |
0.75 |
15.77 |
TS |
28.79 |
0.19 |
9.3 |
-6.47 |
↑ |
|
| NS |
MMP10 |
35.38 |
0.75 |
14.95 |
TS |
22.35 |
0.07 |
2.85 |
-12.09 |
↑ |
|
| NS |
ACTB |
20.43 |
0.06 |
TS |
19.49 |
0.04 |
|||||
| 2 |
NE |
MMP3 |
39.54 |
13.77 |
TE |
39.87 |
12.29 |
-1.48 |
↑ |
||
| NE |
MMP10 |
38.68 |
12.92 |
TE |
30.25 |
0.02 |
2.66 |
-10.25 |
↑ |
||
| NE |
ACTB |
25.76 |
0.166 |
TE |
27.58 |
0.22 |
|||||
| NS |
MMP3 |
39.97 |
15.03 |
TS |
32.58 |
0.42 |
4.21 |
-10.82 |
↑ |
||
| NS |
MMP10 |
UD |
TS |
31.02 |
0.17 |
2.65 |
OFF-N, ON-T |
↑ |
|||
| NS |
ACTB |
24.93 |
0.051 |
TS |
28.36 |
0.159 |
|||||
| 3 |
NE |
MMP3 |
UD |
TE |
38.51 |
1.49 |
14.13 |
OFF-N, ON-T |
↑ |
||
| NE |
MMP10 |
UD |
TE |
31.93 |
0.257 |
7.55 |
OFF-N, ON-T |
↑ |
|||
| NE |
ACTB |
23.45 |
0.058 |
TE |
24.38 |
0.07 |
|||||
| NS |
MMP3 |
UD |
TS |
36.23 |
1.1 |
11.44 |
OFF-N, ON-T |
↑ |
|||
| NS |
MMP10 |
UD |
TS |
34.13 |
0.80 |
9.34 |
OFF-N, ON-T |
↑ |
|||
| NS |
ACTB |
24.40 |
0.016 |
TS |
24.79 |
0.07 |
|||||
| 4 |
NE |
MMP3 |
UD |
TE |
31.89 |
0.174 |
OFF-N, ON-T |
↑ |
|||
| NE |
MMP10 |
39.42 |
15.99 |
TE |
27.00 |
0.03 |
4.59 |
-11.40 |
↑ |
||
| NE |
ACTB |
23.43 |
0.056 |
TE |
22.41 |
0.033 |
|||||
| NS |
MMP3 |
38.95 |
15.91 |
TS |
29.61 |
0.108 |
5.24 |
-10.66 |
↑ |
||
| NS |
MMP10 |
39.1 |
16.06 |
TS |
27.69 |
0.118 |
3.32 |
-12.73 |
↑ |
||
| NS |
ACTB |
23.03 |
0.095 |
TS |
24.36 |
0.05 |
|||||
| 5 | NE |
MMP3 |
UD |
TE |
29.94 |
0.172 |
OFF-N, ON-T |
↑ |
|||
| NE |
MMP10 |
UD |
TE |
30.28 |
0.209 |
OFF-N, ON-T |
↑ |
||||
| NE |
ACTB |
25.31 |
0.073 |
TE |
25.08 |
0.048 |
|||||
| NS |
MMP3 |
39.65 |
16.22 |
TS |
32.59 |
0.334 |
4.81 |
-11.40 |
↑ |
||
| NS |
MMP10 |
39.38 |
15.95 |
TS |
33.01 |
0.451 |
5.23 |
-10.72 |
↑ |
||
| NS | ACTB | 23.43 | 0.0013 | TS | 27.78 | 0.0911 |
NE, normal epithelium; NS, normal stroma; TE, tumor epithelium; TS, tumor stroma.