Skip to main content
. Author manuscript; available in PMC: 2011 Oct 28.
Published in final edited form as: J Phys Chem B. 2010 Oct 28;114(42):13536–13544. doi: 10.1021/jp106406p

Table 2.

X-ray data. Refinement statistics for the three nitrile-modified RNase S variants with data for the highest resolution shell in brackets, all three solved in the C2 space group.

Molecule pCN-RNase mCN-RNase SCN-RNase
Resolution [high res. shell] 1.5 Å [1.49-1.54 Å] 2.5 Å [2.50-2.56 Å] 2.3 Å [2.30-2.36 Å]
# of reflections [high res. shell] 36722 [2652] 7887 [560] 9888 [686]
% possible [high res. shell] 95.8 [92.4] 99.9 [100] 95.8 [95]
Redundancy [high res. shell] 4.5 [3.2] 3.2 [3.2] 1.8 [1.9]
Rworka 0.205 0.209 0.218
Rfreea 0.225 0.271 0.271
Cα RMSDb (A chain / B chain) 0.37 / 0.32 Å 0.42 / 0.37 Å 0.37 / 0.46 Å
Local RMSDc (A chain / B chain) 0.23 / 0.21 Å 0.31 / 0.10 Å 0.52 / 0.26 Å
a

Rfree and Rwork are the R-factors (R=Σ|FobsFcalc|Σ|Fobs| where F are the observed or calculated X-ray structure factors) for two randomly selected subsets of the reflection data. 95% of the total Fobs data points are used to guide refinements to the model (minimizing Rwork), while 5% are set aside to evaluate the improvement (Rfree).

b

The average root-mean-square deviation for all backbone carbon atoms for one molecule of the two molecule asymmetric unit, calculated against a set of published RNase structures of different space groups (7RSA and 1DY5 = P21, 1RNU = P312 ). The average RMSD for the members of the comparison set relative to each other is 0.36 Å.

c

RMSD of all the atoms in the 5 Å neighborhood of the nitrile (excluding the substituted amino-acid) relative to the same atoms in the comparison set. The average RMSDs for the comparison set relative to each other are 0.22, 0.24 / 0.13 and 0.17 Å for pCN, mCN (A /B) and SCN neighborhoods respectively.