Table 2.
X-ray data. Refinement statistics for the three nitrile-modified RNase S variants with data for the highest resolution shell in brackets, all three solved in the C2 space group.
Molecule | pCN-RNase | mCN-RNase | SCN-RNase |
---|---|---|---|
Resolution [high res. shell] | 1.5 Å [1.49-1.54 Å] | 2.5 Å [2.50-2.56 Å] | 2.3 Å [2.30-2.36 Å] |
# of reflections [high res. shell] | 36722 [2652] | 7887 [560] | 9888 [686] |
% possible [high res. shell] | 95.8 [92.4] | 99.9 [100] | 95.8 [95] |
Redundancy [high res. shell] | 4.5 [3.2] | 3.2 [3.2] | 1.8 [1.9] |
Rworka | 0.205 | 0.209 | 0.218 |
Rfreea | 0.225 | 0.271 | 0.271 |
Cα RMSDb (A chain / B chain) | 0.37 / 0.32 Å | 0.42 / 0.37 Å | 0.37 / 0.46 Å |
Local RMSDc (A chain / B chain) | 0.23 / 0.21 Å | 0.31 / 0.10 Å | 0.52 / 0.26 Å |
Rfree and Rwork are the R-factors ( where F are the observed or calculated X-ray structure factors) for two randomly selected subsets of the reflection data. 95% of the total Fobs data points are used to guide refinements to the model (minimizing Rwork), while 5% are set aside to evaluate the improvement (Rfree).
The average root-mean-square deviation for all backbone carbon atoms for one molecule of the two molecule asymmetric unit, calculated against a set of published RNase structures of different space groups (7RSA and 1DY5 = P21, 1RNU = P312 ). The average RMSD for the members of the comparison set relative to each other is 0.36 Å.
RMSD of all the atoms in the 5 Å neighborhood of the nitrile (excluding the substituted amino-acid) relative to the same atoms in the comparison set. The average RMSDs for the comparison set relative to each other are 0.22, 0.24 / 0.13 and 0.17 Å for pCN, mCN (A /B) and SCN neighborhoods respectively.