Table 7. The ratios of intermolecular hydrogen bond and van der Waals contacts made between the protein and the base/backbone component of the nucleic acid for the three datasets of protein–nucleic acid complexes: protein–RNA (complete dataset), protein–dsDNA and protein–ssDNA.
Contact (base/backbone ratio) | RNA (all) | dsDNA | ssDNA | RNA | ||
|
|
|
|
Virala |
Synthesisb |
Modificationsc |
Hydrogen bonds | 1.0 | 0.5 | 0.9 | 1.2 | 0.6 | 2.4 |
van der Waals contacts | 1.4 | 0.3 | 1.4 | 1.9 | 0.9 | 3.2 |
Ratios are also shown for the three functional subsets of the protein–RNA complexes: viral proteinsa, protein synthesis proteinsb and RNA modification proteinsc.