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. Author manuscript; available in PMC: 2010 Oct 25.
Published in final edited form as: Eur J Mass Spectrom (Chichester). 2010;16(3):421–428. doi: 10.1255/ejms.1028

Figure 7.

Figure 7

Fragment assignment of a glycopeptide CID using MS-Product from SearchCompare output of ProteinProspector. The green y fragment assignments indicate gas-phase deglycosylation, while the glycosylated y5 and y6 ions (in blue) show that there is sufficient information to pinpoint the modification site.