Figure 1.
Summary information of the Quality Control procedure of the genotype data. Shown are the cut-offs for dropping SNPs or individuals from the dataset.
MAF=Minor allele frequency, HWE=Hardy Weinberg Equilibrium, SNPs=Single Nucleotide Polymorphism, * using the Birdseed v2 algorithm as implemented in the BirdSuite software (Korn, et al., 2008), **as implemented in PLINK mishap test (Purcell, et al., 2007).