Table 2. SNPs selected for further genotyping in independent samples.
| SNPs selected for replicationa | Block # | Gene | Rankingb |
| rs7507114 | 1015 | C18orf1, C18orf15 | 1 |
| rs4800148 | 1121 | CABLES1 | 1 |
| rs11659463 | 2162 | SMAD2, MADH2 | 3 |
| rs17802670 | 256 | DLGAP1 | 4 |
| rs17439829 | 559 | LAMA1 | 5 |
| rs9957285 | 2094 | LOXHD1 | 5 |
| rs11874896 | 449 | EPB41L3 | 7 |
| rs10502812 | 1936 | AK131011 | 7 |
| rs4464148 | 2246 | SMAD7 | 7 |
| rs3018202 | 1913 | RIT2, U78166 | 10 |
| rs7241007 | N/A | ZNF519 | 10 |
| rs6505873 | 1049 | ZNF519 | 12 |
| rs12607710 | 975 | PTPN2 | 15 |
| rs1299348 | 1033 | MC5R | 15 |
| rs9958315c | 1571 | C18orf34 | 15c |
| rs1790480 | 2294 | ACAA2, SCARNA17 | 15 |
| rs506696 | 2296 | MYO5B | 15 |
| rs11873029 | N/A | FLJ20071, DYM | 15 |
| rs11661879 | 2240 | KIAA0427 | 22 |
| rs8083578 | 2654 | NEDD4L | 22 |
| rs8094063 | 2346 | MRO, B29 | 25 |
| rs1941001 | 441 | EPB41L3 | 28 |
| rs8094327 | 2663 | NEDD4L | 30 |
| rs555879 | N/A | MYO5B | 30 |
| rs12606138 | 2664 | NEDD4L | 34 |
Displayed are the SNPs selected for further genotyping in the independent replication samples. The p-values for these SNPs can be found in Tables S3 & S4.
a
Some SNPs were replaced by proxy SNPs if the original were not compatible with the assays designed for the iPLEX genotyping system;
b
ranking only given for those SNPs selected for genotyping in replication samples. Equally ranked SNPs are given the same rank number, and subsequent rank numbers are skipped to compensate;
c
This SNP (rs9958315) failed genotyping in the replication samples.