Skip to main content
. Author manuscript; available in PMC: 2011 Feb 15.
Published in final edited form as: Proteins. 2010 Feb 15;78(3):671–680. doi: 10.1002/prot.22596

Table I.

Observed catalytic efficiencies (kpol/Kd) and resulting TS binding free energies (ΔGTSbind,obs).a

Pol β variant A:T G:C


kpol/Kd
[M-1s-1]
ΔGTSbind,obs
[kcal/mol]
kpol/Kd
[M-1s-1]
ΔGTSbind,obs
[kcal/mol]
wild type 4,100,000 -14.6 6,600,000 -14.9
R149A 685,000 -13.5 920,000 -13.7
R183A 43,000 -11.8 440,000 -13.2
K280A n.a.b n.a.b 2,000,000 -14.1
Pol β variant A:C G:T


kpol/Kd
[M-1s-1]
ΔGTSbind,obs
[kcal/mol]
kpol/Kd
[M-1s-1]
ΔGTSbind,obs
[kcal/mol]

wild type 1,200 -9.6 570 -9.1
R149A 312 -8.7 n.a.b n.a.b
R183A 14.6 -6.8 2.6 -5.8
K280A n.a.b n.a.b 220 -8.5
a

The pre-steady state experiments for the incorporation of T or C opposite A (A:T and A:C) or G (G:T and G:C) were all conducted in the same laboratory under the same conditions, allowing for a consistent set of data.17 Binding free energies were calculated using Equation 1; the rate constant for the reference reaction in water (kwater = 2.8 × 10-4 M-1s-1) was taken from Reference 42.

b

n.a., not available.