Table I.
Pol β variant | A:T | G:C | ||
---|---|---|---|---|
kpol/Kd [M-1s-1] |
ΔGTSbind,obs [kcal/mol] |
kpol/Kd [M-1s-1] |
ΔGTSbind,obs [kcal/mol] |
|
wild type | 4,100,000 | -14.6 | 6,600,000 | -14.9 |
R149A | 685,000 | -13.5 | 920,000 | -13.7 |
R183A | 43,000 | -11.8 | 440,000 | -13.2 |
K280A | n.a.b | n.a.b | 2,000,000 | -14.1 |
Pol β variant | A:C | G:T | ||
|
|
|||
kpol/Kd [M-1s-1] |
ΔGTSbind,obs [kcal/mol] |
kpol/Kd [M-1s-1] |
ΔGTSbind,obs [kcal/mol] |
|
| ||||
wild type | 1,200 | -9.6 | 570 | -9.1 |
R149A | 312 | -8.7 | n.a.b | n.a.b |
R183A | 14.6 | -6.8 | 2.6 | -5.8 |
K280A | n.a.b | n.a.b | 220 | -8.5 |
The pre-steady state experiments for the incorporation of T or C opposite A (A:T and A:C) or G (G:T and G:C) were all conducted in the same laboratory under the same conditions, allowing for a consistent set of data.17 Binding free energies were calculated using Equation 1; the rate constant for the reference reaction in water (kwater = 2.8 × 10-4 M-1s-1) was taken from Reference 42.
n.a., not available.